CX288186

Overview
NameCX288186
Unique NameCX288186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK4_ARATH (Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 66/132 (50.00%), Postives = 91/132 (68.94%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQ 404
            G G +LK  N +IKV+G+EPSE +++SG  PG          ++P  LD  +LDEV +VS+ EA+E+A++LAL+EGLLVGISSG      + + KR ENAGKLI V+FPS GERY+++ LF SI  E + M+
Sbjct:  282 GTGGFLKMMNKDIKVVGVEPSERSVISGDNPG----------YLPGILDVKLLDEVFKVSNGEAIEMARRLALEEGLLVGISSGAAAVAAVSLAKRAENAGKLITVLFPSHGERYITTALFSSINREVQEMR 403          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQ 374
            GAG  LKE  P+IK+  +EPS+S +LSGGKPGPHKIQGIGAGFVP  L+  V DE+  V ++EA E A++ A +EG+L GISSG      ++V K+     K++A++ PS GERYLS+ L+Q
Sbjct:  186 GAGEVLKEAYPSIKIYAVEPSDSPVLSGGKPGPHKIQGIGAGFVPDILNTEVYDEIFPVKNEEAFEYARRAAREEGILGGISSGAAIYAALQVAKKLGKGKKVLAII-PSNGERYLSTPLYQ 306          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_STAHA (Cysteine synthase (Fragment) OS=Staphylococcus haemolyticus GN=cysK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.618e-28
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            GAG+ LKEK PNI+++ IEP  S +LSGG+PGPHK+QG+GAGFVP  L+  + D +I+V +D A+E ++++A +EG+L GISSG      ++  K     GK +  V PS GERYLS+ L+
Sbjct:   32 GAGKVLKEKYPNIEIVAIEPEASPVLSGGEPGPHKLQGLGAGFVPDTLNTDIYDSIIQVGNDIAMETSRRVAKEEGILAGISSGAAIHAAIQKAKE-LGKGKTVLTVLPSNGERYLSTPLY 151          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.317e-27
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G G+ LK++ PN++++ IEP  S +LSGG+PGPHK+QG+GAGFVP  L+  V D +I+V +D A+++A+++A +EG+L GISSG      ++  K     GK +  V PS GERYLS+ L+
Sbjct:  187 GVGKVLKKEYPNVEIVAIEPEASPVLSGGEPGPHKLQGLGAGFVPDTLNTEVYDSIIKVGNDTAMDMARRVAREEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.317e-27
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G G+ LK++ PN++++ IEP  S +LSGG+PGPHK+QG+GAGFVP  L+  V D +I+V +D A+++A+++A +EG+L GISSG      ++  K     GK +  V PS GERYLS+ L+
Sbjct:  187 GVGKVLKKEYPNVEIVAIEPEASPVLSGGEPGPHKLQGLGAGFVPDTLNTEVYDSIIKVGNDTAMDMARRVAREEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_STAAW (Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.556e-27
Identity = 56/121 (46.28%), Postives = 85/121 (70.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G G+ LK++ PNI+++ IEP  S +LSGG+PGPHK+QG+GAGF+P  L+  + D +I+V +D A+E+++++A +EG+L GISSG      ++  K     GK +  V PS GERYLS+ L+
Sbjct:  187 GVGKVLKKEYPNIEIVAIEPEASPVLSGGEPGPHKLQGLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_STAAS (Cysteine synthase OS=Staphylococcus aureus (strain MSSA476) GN=cysK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.556e-27
Identity = 56/121 (46.28%), Postives = 85/121 (70.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G G+ LK++ PNI+++ IEP  S +LSGG+PGPHK+QG+GAGF+P  L+  + D +I+V +D A+E+++++A +EG+L GISSG      ++  K     GK +  V PS GERYLS+ L+
Sbjct:  187 GVGKVLKKEYPNIEIVAIEPEASPVLSGGEPGPHKLQGLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_STAAR (Cysteine synthase OS=Staphylococcus aureus (strain MRSA252) GN=cysK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.556e-27
Identity = 56/121 (46.28%), Postives = 85/121 (70.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G G+ LK++ PNI+++ IEP  S +LSGG+PGPHK+QG+GAGF+P  L+  + D +I+V +D A+E+++++A +EG+L GISSG      ++  K     GK +  V PS GERYLS+ L+
Sbjct:  187 GVGKVLKKEYPNIEIVAIEPEASPVLSGGEPGPHKLQGLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_STAAN (Cysteine synthase OS=Staphylococcus aureus (strain N315) GN=cysK PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.556e-27
Identity = 56/121 (46.28%), Postives = 85/121 (70.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G G+ LK++ PNI+++ IEP  S +LSGG+PGPHK+QG+GAGF+P  L+  + D +I+V +D A+E+++++A +EG+L GISSG      ++  K     GK +  V PS GERYLS+ L+
Sbjct:  187 GVGKVLKKEYPNIEIVAIEPEASPVLSGGEPGPHKLQGLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_STAAM (Cysteine synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cysK PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.556e-27
Identity = 56/121 (46.28%), Postives = 85/121 (70.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G G+ LK++ PNI+++ IEP  S +LSGG+PGPHK+QG+GAGF+P  L+  + D +I+V +D A+E+++++A +EG+L GISSG      ++  K     GK +  V PS GERYLS+ L+
Sbjct:  187 GVGKVLKKEYPNIEIVAIEPEASPVLSGGEPGPHKLQGLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
The following BLAST results are available for this feature:
BLAST of CX288186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CYSK4_ARATH3.509e-2950.00Probable cysteine synthase, chloroplastic OS=Arabi... [more]
CYSK_BACSU5.986e-2953.28Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSK_STAHA6.618e-2849.59Cysteine synthase (Fragment) OS=Staphylococcus hae... [more]
CYSK_STAES7.317e-2747.11Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAEQ7.317e-2747.11Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAAW9.556e-2746.28Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAS9.556e-2746.28Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAR9.556e-2746.28Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAN9.556e-2746.28Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAM9.556e-2746.28Cysteine synthase OS=Staphylococcus aureus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC01017F09SK Veg1 Citrus clementina cDNA clone C01017F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288186 ID=CX288186; Name=CX288186; organism=Citrus clementina; type=EST; length=652bp
CGGCACGAGGAGCTGGTCGATATCTTAAAGAGAAAAACCCTAATATCAAG
GTTATTGGCATAGAGCCTTCCGAAAGCAATATACTTTCAGGTGGAAAGCC
TGGTCCGCACAAGATTCAAGGGATTGGAGCAGGTTTTGTTCCCAGGAATT
TGGATGAGGGTGTGCTTGATGAAGTCATTGAGGTATCTAGTGATGAAGCT
GTTGAAATTGCAAAGCAGTTAGCACTCCAGGAAGGCTTGCTGGTTGGCAT
ATCTTCTGGGGCGGCAGCTGCTGCAGCAATGGAGGTTGGGAAGAGACCTG
AGAATGCTGGAAAGCTTATTGCAGTTGTGTTTCCGAGCTTTGGAGAACGA
TATCTCTCATCCGTTCTTTTCCAGTCAATCCGCGAAGAATGTGAGAACAT
GCAGCCTGTGCCGTGAAATTCAACTCTTCGAGATTTATTGAAAATGCAAA
GCTTATTTTTCTGTCTTTCATAGACATTGTCATACATTTTGCTTTTGTTT
TAGTCAATATTTTCTGTTTTTGTGTACATCCACTAGTAGGATCCTAATTA
TAGTTATGTCCATTCATGACTGTTAAGTCCTTTTTTAAGAAGGAAAATCC
TGTTATTTGTGGAATTCATCTTAGGGGTGGAATTTGTGATTACATTTCTC
CT
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