CX288186

Overview
NameCX288186
Unique NameCX288186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSI 380
            G G  LKE  P+I V  +EP+ S +LSGGKPG HK+ G   GF+P  L+E V DE+I++S ++A    ++LA +EG+LVG SSG      +E  KR  +  K++  +    GERYLS+ L+  I
Sbjct:  189 GTGEALKELFPDITVHVVEPAGSPVLSGGKPGAHKLVGTSPGFIPPILNEDVYDEIIKISDEDAYTTTRRLAAEEGILVGPSSGAACFAAIETAKR-LSPDKVVVCMTADTGERYLSTDLWSFI 311          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.633e-20
Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKR-PENAGKLIAVVFPSFGERYLSSVLF 371
            G G  LKEK   + ++G+EP  S +LS G+ G HKIQGIGA F+P  L++ V+DEVI VS+++A+  AK+LA + GL+VGISSG        + K+ P+   K I  +     ERYLS+ LF
Sbjct:  181 GVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQGIGANFIPAILNKEVIDEVITVSNEDAINTAKELA-KSGLMVGISSGANVFAASMLAKKFPD---KRILTMLNDTAERYLSTDLF 298          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVP---RNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXM-EVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G  +YLKE+ PNI++IG+EP E +IL+GG+PGPH+I+GIG  F+P    NLD   +D    +S +E     ++LA + GLLVG SSG      + EV + PE  G  +  +FP   +RYLS  ++
Sbjct:  186 GMAKYLKERIPNIRLIGVEP-EGSILNGGEPGPHEIEGIGVEFIPPFFANLD---IDRFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFAAALKEVQRLPE--GSQVLTIFPDMADRYLSKGIY 304          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQ 374
            G   +LKEKNP +K + +EP  S IL+GG+P  HK +GIG  F+P  +D+   DE+  V+ + A  + K+ A +EGLL+G SSG      +E  K+  +AG  I  VFP   +RY+S  +++
Sbjct:  185 GTASFLKEKNPAVKTVIVEPVGS-ILNGGEPHAHKTEGIGMEFIPDYMDKSHFDEIYTVTDENAFRLVKEAAEKEGLLIGSSSGAALYAALEEAKK-ASAGTNIVTVFPDSSDRYISKQIYE 304          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSM_HELPY (Cysteine synthase OS=Helicobacter pylori GN=cysM PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.578e-19
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKR-PENAGKLIAVVFPSFGERYLSSVLF 371
            G  RYLKE+ P I++IG+EP E +IL+GG+PGPH+I+GIG  F+P   +   +D    +S +E     ++LA + GLLVG SSG      ++  +R PE  G  +  +FP   +RYLS  ++
Sbjct:  187 GTARYLKERIPAIRLIGVEP-EGSILNGGEPGPHEIEGIGVEFIPPFFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEAQRLPE--GSQVLTIFPDVADRYLSKGIY 305          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17
Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVG 248
            G  + LKEK PN+KVI +EP  S +LSGG P PH +QG+GAGFVP  LD  +LD VI V  DEA E A   A +EGL  G
Sbjct:  183 GIAKALKEKYPNLKVIAVEPELSPVLSGGSPAPHPLQGLGAGFVPSILDITLLDGVITVGKDEAYEYAINAAKKEGLFCG 262          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 38/121 (31.40%), Postives = 71/121 (58.68%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLF 371
            G  RYLKE+NP ++++G++P E + + G +  P +       ++P+  D   +D V+++  DEA +I ++LA +EG+  G+SSG      + + +  ENA  ++  +    G+RYLSS ++
Sbjct:  185 GVSRYLKEQNPAVQIVGLQPMEGSAIPGIRRWPQE-------YLPKIYDASRVDRVVDMHQDEAEDIMRRLAREEGIFCGVSSGGAVAAMLRLSRELENA--VLVAIICDRGDRYLSSGVY 296          
The following BLAST results are available for this feature:
BLAST of CX288186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CYSM_BACSU2.280e-2043.55Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSM_CAMJE6.633e-2045.90Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_HELPJ1.930e-1943.20Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
MCCA_BACSU3.292e-1940.16O-acetylserine dependent cystathionine beta-syntha... [more]
CYSM_HELPY9.578e-1940.98Cysteine synthase OS=Helicobacter pylori GN=cysM P... [more]
CYSK_FLAS33.081e-1756.25Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CYSM_PSEAE9.277e-1431.40Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC01017F09SK Veg1 Citrus clementina cDNA clone C01017F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288186 ID=CX288186; Name=CX288186; organism=Citrus clementina; type=EST; length=652bp
CGGCACGAGGAGCTGGTCGATATCTTAAAGAGAAAAACCCTAATATCAAG
GTTATTGGCATAGAGCCTTCCGAAAGCAATATACTTTCAGGTGGAAAGCC
TGGTCCGCACAAGATTCAAGGGATTGGAGCAGGTTTTGTTCCCAGGAATT
TGGATGAGGGTGTGCTTGATGAAGTCATTGAGGTATCTAGTGATGAAGCT
GTTGAAATTGCAAAGCAGTTAGCACTCCAGGAAGGCTTGCTGGTTGGCAT
ATCTTCTGGGGCGGCAGCTGCTGCAGCAATGGAGGTTGGGAAGAGACCTG
AGAATGCTGGAAAGCTTATTGCAGTTGTGTTTCCGAGCTTTGGAGAACGA
TATCTCTCATCCGTTCTTTTCCAGTCAATCCGCGAAGAATGTGAGAACAT
GCAGCCTGTGCCGTGAAATTCAACTCTTCGAGATTTATTGAAAATGCAAA
GCTTATTTTTCTGTCTTTCATAGACATTGTCATACATTTTGCTTTTGTTT
TAGTCAATATTTTCTGTTTTTGTGTACATCCACTAGTAGGATCCTAATTA
TAGTTATGTCCATTCATGACTGTTAAGTCCTTTTTTAAGAAGGAAAATCC
TGTTATTTGTGGAATTCATCTTAGGGGTGGAATTTGTGATTACATTTCTC
CT
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