CX288192

Overview
NameCX288192
Unique NameCX288192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.075e-46
Identity = 97/210 (46.19%), Postives = 140/210 (66.67%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            A  +RT+LGPKGMDKML    GD+ +TNDG TIL++MD+++  AK++VE++++Q+ E+GDGTT  V++AG LL++AE LLE  IHP  IA GY  A+  A E L+ IA       +D + L++  MT +  K   + +  LAE+ V AV  V   E  +V  D IK+E K G  ++D+ L+ G+ +DK+  HP MPK++ENAKIA+L CP
Sbjct:   35 AETVRTTLGPKGMDKMLVDSLGDIVVTNDGVTILKEMDIEHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKKAENLLEMEIHPTIIAMGYRQAAEKAQEILDDIA----IDASDRDTLMKVAMTAMTGKGTEKAREPLAELIVDAVKQVE--EDGEVEKDHIKIEKKEGAAVDDSTLVQGVIIDKERVHPGMPKKVENAKIALLNCP 238          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.404e-46
Identity = 100/209 (47.85%), Postives = 146/209 (69.86%), Query Frame = 3
Query:   24 LRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            +R+SLGP+GMDKML    GD+ ITNDG TIL++MDV++  AK+MVE+S++QD  +GDGTT  V++AG LL+QA+ L+ + +HP  I+EGY MAS  A   ++ I+ K   G ++   L++   T+LNSK  +  K +LAEI+ +AV +VA+L   +  V+ D I+V  K GG ++DT+LI GI VDK+  HP MP  +++AKIA+L  P
Sbjct:   37 VRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK--IGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAP 243          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.404e-46
Identity = 101/209 (48.33%), Postives = 143/209 (68.42%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A  +R++LGPKGMDKML    GDV ITNDG TIL+++DV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY  A+  A+E L  IA       +D E L +   T +  K       +LAEIAV AV  +A+    + +VN D IK+E + GG +E+TEL+ GI +DK++ HP MPKR+ENAKI +L
Sbjct:   36 AEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIA--IPISKDDDEILKKIATTAMTGKGAEVAIDKLAEIAVNAVKMIAEESNGQVEVNTDYIKIEKRQGGSIEETELVDGIVLDKEVVHPGMPKRVENAKILLL 242          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.404e-46
Identity = 100/209 (47.85%), Postives = 144/209 (68.90%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADL--ERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A  ++++LGPKGMDKML    GDV ITNDG TIL++MDV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY MA+  AVE LE IA   +  + D E L +   T +  K        L+ + V+AV  VA+   +R  V+ D IK+E + GG + DT+L+ GI +DK++ HP MPKR++NAKIA+L
Sbjct:   36 AEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVEILESIA--MDIDVEDEETLKKIAATAITGKHSEYALDHLSSLVVEAVKRVAEKVDDRYKVDEDNIKLEKRQGGSVADTKLVNGIVIDKEVVHPGMPKRVKNAKIAVL 242          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.129e-46
Identity = 97/206 (47.09%), Postives = 142/206 (68.93%), Query Frame = 3
Query:   24 LRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADL--ERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            L+++ GP+GMDKM     GD+TITNDGATIL++MD+ +   KL+V++++ QD E  DGT   V++AG L ++AE LL + IHP  I  GY+ A  IA++ ++ IAQ     +ND + L +  +T+L SK V   +  LA++ VKAV  VA+L  ++  V+LD +++  K GG + DT+L+YGI VDK++ HP MPKRIENAKIA+L
Sbjct:   45 LKSTYGPRGMDKMFVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQDIAQ--PVSINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQVAELRGDKWYVDLDNVQIVKKHGGSINDTQLVYGIVVDKEVVHPGMPKRIENAKIALL 248          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.337e-46
Identity = 100/205 (48.78%), Postives = 144/205 (70.24%), Query Frame = 3
Query:   24 LRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADL-ERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            +RTSLGP+GMDKM+Q+ +G+VTITNDGATIL+QM+V +  AK++VELSR+QD E GDGTT VVV+AG+LL+  EKLL+ GIHP  I++ ++  S  AV+ L  ++   E  L D E LV++  T+LNSK+V++   +LA IAV+AVL V +      V+L  +K+   +GG ++DTEL+ G+   +       PKR+E AKI ++
Sbjct:   41 IRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIE--LTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTEAGHESGVDLKNVKIIRSLGGTIDDTELVDGLVFTQRSCGVNGPKRVEKAKIGLI 243          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.189e-45
Identity = 100/216 (46.30%), Postives = 146/216 (67.59%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRR--LAEIAVKAVLAVADLERKD----VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            A +L++SLGP+G+DKML    GD+T+TNDGATI+++M++ +  AKL+VE++++QD E+GDGTT VVV+AG+LLE+AEKLL+  +HP  I EGY  A   A+  ++  A   E  + D   L +   TTL SK V     R  +  + + A+  VA+ +R D    V+LD +K+E K GG L D++L+ GI +DK++ HP MPKR+ENAKI +L  P
Sbjct:   35 AEMLKSSLGPRGLDKMLVDAFGDITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAMEEALRLVDEAAVPVE--VEDDSVLRRIAETTLASKFVGTGPERDKIISMVIDAIRTVAE-KRPDGGYEVDLDYVKIEKKKGGSLLDSKLVRGIVLDKEVVHPAMPKRVENAKILVLDAP 247          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.995e-44
Identity = 96/218 (44.04%), Postives = 152/218 (69.72%), Query Frame = 3
Query:    9 TRARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEF-GLNDL---EPLVQTCMTTLNSKMVNRCKR--RLAEIAVKAVLAVADLERK---DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            T A +L++SLGP+G+DKML    GDVTITNDGATI+++M++ +  AKL+VE +++QD E+GDGTT  VV+AG LL++A+ LL++ IHP  I EGY+ A   ++E ++++A K +   LN L   + L +   TT++SK +   +   ++  + + AV  VA+   +   +V LDLIK++ K GG +ED+ L++G+ +DK++ HP MP+R+E AKIA+L
Sbjct:   31 TLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEIIDQLATKIDVSNLNSLATRDQLKKIVYTTMSSKFIAGGEEMDKIMNMVIDAVSIVAEPLPEGGYNVPLDLIKIDKKKGGSIEDSMLVHGLVLDKEVVHPGMPRRVEKAKIAVL 248          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 6.524e-44
Identity = 98/220 (44.55%), Postives = 148/220 (67.27%), Query Frame = 3
Query:    9 TRARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL------EPLVQTCMTTLNSKMVNRCK--RRLAEIAVKAVLAVADLERK---DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            T A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +  + DL      + L +   TTL SK +       ++ ++ + A++ VA+       +V+LDLIK++ K GG +ED+ L+ G+ +DK++ HP MP+R+  AKIA+L
Sbjct:   30 TLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELLPQLGTRID--IKDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNVAEPLPNGGYNVSLDLIKIDKKKGGSIEDSVLVKGLVLDKEVVHPGMPRRVTKAKIAVL 247          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.520e-44
Identity = 98/220 (44.55%), Postives = 148/220 (67.27%), Query Frame = 3
Query:    9 TRARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL------EPLVQTCMTTLNSKMVNRCK--RRLAEIAVKAVLAVADLERK---DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            T A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +  + DL      + L +   TTL SK +       ++ ++ + A++ VA+       +V+LDLIK++ K GG +ED+ L+ G+ +DK++ HP MP+R+  AKIA+L
Sbjct:   30 TLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELLPQLGTRID--IRDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNVAEPLPNGGYNVSLDLIKIDKKKGGSIEDSVLVKGLVLDKEVVHPGMPRRVTKAKIAVL 247          
The following BLAST results are available for this feature:
BLAST of CX288192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
THSB_METTH1.075e-4646.19Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSB_THEAC1.404e-4647.85Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSB_ARCFU1.404e-4648.33Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THSA_ARCFU1.404e-4647.85Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THSB_SULSH3.129e-4647.09Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
TCPD_AEDTR5.337e-4648.78T-complex protein 1 subunit delta OS=Aedes triseri... [more]
THSA_AERPE1.189e-4546.30Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSA_SULTO4.995e-4444.04Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSA_SULSO6.524e-4444.55Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_SULSH8.520e-4444.55Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]

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Properties
Property NameValue
Genbank descriptionC01017G03SK Veg1 Citrus clementina cDNA clone C01017G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288192 ID=CX288192; Name=CX288192; organism=Citrus clementina; type=EST; length=648bp
AATTCGGCACGAGGGCTCGGATCCTCCGAACCTCCCTCGGACCCAAAGGC
ATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACAAATGA
TGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGC
TGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATGGTACA
ACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAGAAGCT
TTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGAAATGG
CTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGTTTGAG
TTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACTACTTT
AAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGATTGCTG
TCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCAATTTA
GATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTGA
GCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATGC
CAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTG
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