CX288192

Overview
NameCX288192
Unique NameCX288192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 45/175 (25.71%), Postives = 88/175 (50.29%), Query Frame = 3
Query:    9 TRARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEG 521
            T A  +R ++GPKG + +L+   G   I NDG T+ + +++++ +    AKL+ E++       GDGTT   V+A S++++  K +  G +P+ +  G E    + V+ ++ +A+  E    +    V T     ++++       + ++    V+ V   E K ++ DL  VEG
Sbjct:   21 TLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDIELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRGIEKTVSLLVKEIQTVAKPVE---GEAIAQVATVSAGGDAEVGRMISEAMDKVTKDGVITVE--ESKSLSTDLEVVEG 190          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: CH601_SACEN (60 kDa chaperonin 1 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 38/118 (32.20%), Postives = 68/118 (57.63%), Query Frame = 3
Query:    9 TRARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 350
            T A  ++ +LGPKG + +L+   G  TITNDG +I +++++++      A+L+ E+++  D   GDGTT   V+A +L+ +  + +  G  PI +  G E A+    E L + A++ E
Sbjct:   21 TLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPWEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGASPIALKRGIEKATEAIAEQLLKSAKEIE 138          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: CH601_CORJK (60 kDa chaperonin 1 OS=Corynebacterium jeikeium (strain K411) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 55/217 (25.35%), Postives = 101/217 (46.54%), Query Frame = 3
Query:    9 TRARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPF 647
            T A  ++ +LGPKG + +L+   G  TITNDG TI  ++++++      A+L+ E+++  D   GDGTT   V+A SL+ +  + +  G +P+ I  G +         +E+I  +      ++E   Q   T      ++    ++ E+  +A+  V D +     +  ++     G  LE TE   G+  DK          +E  + A+L  P+
Sbjct:   21 TLADAVKVTLGPKGRNVVLERKWGAPTITNDGVTIAREIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVREGLRNVAAGSNPMGIKRGIQAG-------VEKITAELLSHAKEIETQEQIAATA----GISAADEKIGELIAEAMYKVGDGKLNKDGVITVEESNAFGVNLEVTE---GMRFDKGYISGYFATDVERGE-AVLEDPY 222          
The following BLAST results are available for this feature:
BLAST of CX288192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
CH601_TRIEI9.508e-1125.7160 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_SACEN9.508e-1132.2060 kDa chaperonin 1 OS=Saccharopolyspora erythraea... [more]
CH601_CORJK9.508e-1125.3560 kDa chaperonin 1 OS=Corynebacterium jeikeium (s... [more]

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Properties
Property NameValue
Genbank descriptionC01017G03SK Veg1 Citrus clementina cDNA clone C01017G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288192 ID=CX288192; Name=CX288192; organism=Citrus clementina; type=EST; length=648bp
AATTCGGCACGAGGGCTCGGATCCTCCGAACCTCCCTCGGACCCAAAGGC
ATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACAAATGA
TGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGC
TGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATGGTACA
ACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAGAAGCT
TTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGAAATGG
CTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGTTTGAG
TTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACTACTTT
AAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGATTGCTG
TCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCAATTTA
GATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTGA
GCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATGC
CAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTG
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