CX288192

Overview
NameCX288192
Unique NameCX288192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 94/208 (45.19%), Postives = 143/208 (68.75%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD-LERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  +  L+D E L+ +  T+LNSK+V++    L+ ++V AV+ V D      V+L  IK+  K+GG ++D EL+ G+ + + +++  +  R+E AKI ++
Sbjct:   45 ADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ--LSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGI-TRVEKAKIGLI 249          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 94/208 (45.19%), Postives = 143/208 (68.75%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD-LERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  +  L+D E L+ +  T+LNSK+V++    L+ ++V AV+ V D      V+L  IK+  K+GG ++D EL+ G+ + + +++  +  R+E AKI ++
Sbjct:   45 ADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ--LSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGI-TRVEKAKIGLI 249          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.152e-40
Identity = 90/208 (43.27%), Postives = 144/208 (69.23%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAIL 635
            A  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +A+++VE+S +QD E GDGTT VV++ G+LL  AE+LL +GIHP  IA+ ++ A++ +V+ L  +  K    L+D E LV+   T+L+SK+V++    LA +AV +VL ++D   K+V+L+ I++  KVGG ++DTE+I G+ + +  +     P R E AKI ++
Sbjct:   32 ADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHK--VSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLI 237          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40
Identity = 93/207 (44.93%), Postives = 129/207 (62.32%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A  +RT+LGPKGMDKML    G V +TNDG TIL++MD+D+  A ++VE+S +Q+ E+GDGTT  V+ AG LL+QAE LL+  +H   IA+GY  A+  A E LE  A   E   +D E L +   T +  K     K  L+E+ V AVLAV D +  D N   + +E  VGG ++++EL+ G+ VDK+     MP  +E+A IAIL
Sbjct:   38 AEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKAKEVLEDNA--IEVTEDDRETLTKIAATAMTGKGAESAKDLLSELVVDAVLAVKDDDGIDTN--NVSIEKVVGGTIDNSELVEGVIVDKERVDENMPYAVEDANIAIL 240          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.565e-40
Identity = 89/207 (43.00%), Postives = 133/207 (64.25%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A  +RT+LGPKGMDKML    G+V +TNDG TIL++MD+++  A ++VE++ +Q+ E+GDGTT  VV++G LL +AE LLE+ IH   +A+GY  A+  A E L+  A   +   +D E L +   T +  K     K  L+++ V+AV +VAD    DV+ D +KVE   GG +E++ELI G+ VDK+     MP  +E+A IA++
Sbjct:   37 AESVRTTLGPKGMDKMLVDSSGEVVVTNDGVTILKEMDIEHPAANMIVEVAETQETEVGDGTTTSVVVSGELLSEAETLLEQDIHATTLAQGYRQAAEKAKELLDDAA--IDVSADDTETLEKIAATAMTGKGAENAKGVLSDLVVRAVQSVAD--DNDVDTDNVKVEKVTGGAIENSELIEGVIVDKERVSENMPYAVEDANIALV 239          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.565e-40
Identity = 96/209 (45.93%), Postives = 140/209 (66.99%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD-LERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQ-MPKRIENAKIAIL 635
            A  +RTSLGPKGMDKM+ SP+ +V I+NDGATIL+ +++ +  AK++ EL+++QD E GDGTT V V+AGSLL    +L+ +GIHP  I+E + +A   ++E L  ++      L D   LV++  T+LNSK+V++    LA IAV AVL+V +     +VNL  IK+  K+GG +EDTEL+ G+  D+  SH    P RI+NAKI ++
Sbjct:   39 ADAIRTSLGPKGMDKMIISPNNEVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVL--VSMSVPVSLTDRVSLVKSATTSLNSKVVSQ-YTNLASIAVDAVLSVINPATAVNVNLKDIKLIKKLGGTIEDTELVQGLVFDQTASHTAGGPTRIQNAKIGLI 244          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.715e-40
Identity = 87/205 (42.44%), Postives = 143/205 (69.76%), Query Frame = 3
Query:   24 LRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAIL 635
            +RTSLGPKGMDKM+++ +G++ I+NDGATIL+ M V +  A+++V++S +QD E GDGTT V ++ GSLL  AEKLL +GIHP  I+E ++ A+  + E L  ++ K    L+D E L++   T+L+SK+V++    L+ +AV +VL V + E  +V+L+ I++  KVGG +++TEL+ G+ + ++ +     P R++ AKIA++
Sbjct:   40 IRTSLGPKGMDKMIKTKNGEIIISNDGATILKHMAVLHPAARMLVDVSAAQDVEAGDGTTSVAILTGSLLGAAEKLLNKGIHPTLISESFQRAATRSAEVLLEMSHK--ISLDDKEALIRAASTSLSSKIVSQHSSLLSPLAVNSVLKVMNEEHTNVDLNDIRLIKKVGGTIDETELVNGVVLTQNVVKTAGGPVRVDKAKIALI 242          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.715e-40
Identity = 92/211 (43.60%), Postives = 142/211 (67.30%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGI----TVDKDMSHPQMPKRIENAKIAIL 635
            A  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++V++S +QD E GDGTT VV++ G+LL  A++LL +GIHP  IAE ++ A+R +VE L  I       L+D E L++   T+L+SK+V++    L+ +AV AVL++ + + K V+L+ I++  KVGG + DTE++ G+    TV K    P M    E AKI ++
Sbjct:   33 ADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVAKMLVDVSAAQDSEAGDGTTSVVILTGALLGAADRLLNKGIHPTIIAESFQKAARRSVETLLEICH--PVSLDDREDLIRAASTSLSSKIVSQYSSFLSPLAVDAVLSITEKDSKTVDLNDIRLVKKVGGTIGDTEMVDGVVLTQTVVKTAGGPTMK---EKAKIGLI 238          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.464e-40
Identity = 90/208 (43.27%), Postives = 143/208 (68.75%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAIL 635
            A  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV++ G+LL  AEKLL +GIHP  IAE ++ A + AVE L  ++++    L D   LV+   T+L+SK+V++    LA +AV  VL++ +    +V+L+ I++  KVGG ++DTE++ G+ + ++ +     P R+E AKI ++
Sbjct:   33 ADAIRTSLGPKGMDKMIKTARGEILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVLLGMSKR--ISLQDRAELVRAASTSLSSKIVSQYSTFLAPLAVDCVLSLTNEASTNVDLNDIRLVKKVGGTIDDTEMVDGVVLTQNIVKSAGGPVRMEKAKIGLI 238          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.408e-38
Identity = 94/212 (44.34%), Postives = 132/212 (62.26%), Query Frame = 3
Query:   21 ILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM--VNRCKRRLAEIAVKAVLAVADLERKDVNLDL--IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            +L++SLGPKG+DKML     DVTITNDGATI++ M+V +  AKL++E +++ D E+GDGTT VVV+AG LLE+AE LL + IHP  I EGY  A   ++E L+ IA K      D + +     TTL+SK         ++  + + A LAV D      +LD+  IK+    GG  +D+ELI GI VDK+ ++  MPKR+EN K+ +   P
Sbjct:   31 MLKSSLGPKGLDKMLVEGQ-DVTITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALNSSLELLKNIADK--ISPEDRKIVHDLVYTTLSSKFFSTEHTLEKIINLVIDASLAVLDKRDGSYDLDIKNIKIVKVNGGEFDDSELINGIVVDKEPTNENMPKRVENVKVMLADFP 239          
The following BLAST results are available for this feature:
BLAST of CX288192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TCPD_RAT1.777e-4145.19T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE1.777e-4145.19T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_YEAST1.152e-4043.27T-complex protein 1 subunit delta OS=Saccharomyces... [more]
THS1_HALVO1.964e-4044.93Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THSA_HALSA2.565e-4043.00Thermosome subunit alpha OS=Halobacterium salinari... [more]
TCPD_DICDI2.565e-4045.93T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_DEBHA5.715e-4042.44T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
TCPD_CANGA5.715e-4043.60T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPD_ASHGO7.464e-4043.27T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
THSG_SULSO1.408e-3844.34Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]

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Properties
Property NameValue
Genbank descriptionC01017G03SK Veg1 Citrus clementina cDNA clone C01017G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288192 ID=CX288192; Name=CX288192; organism=Citrus clementina; type=EST; length=648bp
AATTCGGCACGAGGGCTCGGATCCTCCGAACCTCCCTCGGACCCAAAGGC
ATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACAAATGA
TGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGC
TGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATGGTACA
ACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAGAAGCT
TTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGAAATGG
CTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGTTTGAG
TTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACTACTTT
AAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGATTGCTG
TCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCAATTTA
GATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTGA
GCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATGC
CAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTG
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