CX288192

Overview
NameCX288192
Unique NameCX288192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.096e-38
Identity = 89/214 (41.59%), Postives = 133/214 (62.15%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKD----VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            A  +R++LGPKGMDKML    GDVTITNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLE+ IHP  I  G+ +AS  A E ++ IA++ +   +D E L +   T++  K     K  LA++ V+AV  V  +E  D    V+L+ + +E + G    ++EL+ G  +DKD  H  MP + + A + +L  P
Sbjct:   38 AEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDDIAERVD--PDDEELLKKVAETSMTGKSSELNKELLADLIVRAVRQVT-VEANDGSHVVDLENVSIETQTGRSASESELLTGAVIDKDPVHDDMPVQFDEADVLLLNEP 248          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.124e-38
Identity = 92/212 (43.40%), Postives = 132/212 (62.26%), Query Frame = 3
Query:   21 ILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM--VNRCKRRLAEIAVKAVLAVADLERKDVNLDL--IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            +L++SLGPKG+DKML     D+TITNDGATI++ M+V +  AKL++E +++ D E+GDGTT VVV+AG LLE+AE LL + IHP  I EGY  A   ++E L+ IA K      D + +     TTL+SK         ++  + ++A LAV D      +LD+  IK+    GG  +D+EL+ GI VDK+ ++  MPKR EN K+ +   P
Sbjct:   31 MLKSSLGPKGLDKMLVEGQ-DITITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALSSSLELLKSIADK--ISPEDRKIVHDLVYTTLSSKFFSTEHTLEKIINLVIEASLAVLDKRDGTYDLDIKNIKIVKVNGGEFDDSELVNGIVVDKEPTNENMPKRAENVKVMLADFP 239          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.318e-36
Identity = 92/211 (43.60%), Postives = 136/211 (64.45%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL-AVADLERKDVNLDL--IKVEGKVGGRLEDTELIYGITVDK-DMSHPQMPKRIENAKIAIL 635
            A  +RTSLGPKGMDKM+Q+  G V I+NDG TIL+ M V +  AK++V+LS SQD   GDGTT VV++AGSLL  A+KLL++GIHP  IAE ++ A++ A E +  +++  +  L+D E L++   T+LNSK+V++    LA + V A L A        + LDL  I++   +GG +EDT L  G+ ++   + +   P R+E AKI ++
Sbjct:   32 ADAIRTSLGPKGMDKMIQTARGQVIISNDGNTILQHMAVMHPAAKMLVDLSASQDSVAGDGTTSVVILAGSLLGAADKLLKKGIHPSIIAENFQKAAQRAAEVVMDMSKPID--LSDRETLIRAASTSLNSKIVSQFSSTLAPMLVDAALQAAKKTPEGGLTLDLNDIRIIKSLGGTIEDTTLANGLVLNNYAVKNAGGPSRMEKAKIGLI 240          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.721e-36
Identity = 86/212 (40.57%), Postives = 127/212 (59.91%), Query Frame = 3
Query:   21 ILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEF-GLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDL---IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            I+RT+LGPK M KML  P G + +TNDG  IL ++DV +  AK M+EL+R+QD E+GDGTT V+++AG +L   E  LER IHP  I   Y  A    V   E   +  +    NDL+ +V +C+ T   K  ++    + ++AVKAV +V   E   V +D+    KVE   GG LE++ ++ G+  +KD++HP M + IEN ++ +L CP
Sbjct:   36 IVRTTLGPKSMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELARAQDEEVGDGTTSVIILAGEILSAVESFLERDIHPTVIVGAYFQALEEIVRLTESYGEPIDIENENDLQKIVSSCIGT---KFSSKWGNLIVDLAVKAVKSVYKKEGDYVEIDVKRYAKVEKIPGGLLEESVVLDGVMFNKDVTHPGMRRYIENPRVVLLDCP 244          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.007e-36
Identity = 88/212 (41.51%), Postives = 135/212 (63.68%), Query Frame = 3
Query:   21 ILRTSLGPKGMDKMLQSPD----GDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            +++++LGPKGMDK+L S +    G + +TNDGATIL+ + VDN  AK++V++S +QD+E+GDGTT V V+A  LL++AEKL+ + IHP  I  GY  A  IA E L++     E G N  + L++   TTL SK++++ K   A++AV AVL +    +   NLD I++  K+GG + ++ L  G  ++K +     P+R+E AKI I   P
Sbjct:   33 LVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKK--SSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVLRL----KGSGNLDAIQIIKKLGGSMNESYLDEGFLLEK-LPGMFQPRRVEKAKILIANTP 237          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.540e-36
Identity = 86/211 (40.76%), Postives = 129/211 (61.14%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKD----VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A  +R++LGPKGMDKML S  GDVT+TNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLER IHP  I +GY +A+  A E ++ +A   +   +D + +     T++  K     K  L+ I   AV  VA +E  D    V+   I +E + G  + +++L+ G  + KD  H QMP  +E+A + +L
Sbjct:   39 ADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAREEVDNVA--VDVDPDDKDLIRSVAETSMTGKGAELDKELLSSIIYDAVNQVA-VETNDGGIVVDAANINIETQTGHGVNESQLLRGAAISKDPVHDQMPAAVEDADVLLL 246          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.540e-36
Identity = 81/214 (37.85%), Postives = 132/214 (61.68%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLN-DLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDL---IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            A ++RT LGP+ M KML  P G V +TNDG  IL +++V +  AK M+EL+R+QD E+GDGTT V+++AG +L  A  LL+R IHP+ +   ++ A   A+  ++ I        N ++  L++TC+ T   K+V R    +  +A++AV  VA      + +D+    +VE   GG +E + ++ G+ ++KD++HP+M +RIEN +I +L CP
Sbjct:   32 ADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGT---KLVARWSDLMCHLALRAVRTVASTSNGRMEIDIKRYARVEKVPGGEIESSCVLDGVMLNKDVTHPKMRRRIENPRIVLLDCP 242          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.747e-34
Identity = 87/207 (42.03%), Postives = 131/207 (63.29%), Query Frame = 3
Query:   21 ILRTSLGPKGMDKMLQSPDGDVT-ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-IHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL-EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAI 632
            +++++LGPKGMDK+LQS   +   +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V++  LL +AEKL+++  IHP  I EGY +AS  A++ L + A           E L+    TTL+SK++++ K   AE+A  A+L +    +   NL+ I++   +GG+L D+ L  G  + K   + Q PKRIENAKI I
Sbjct:   32 LVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRL----KGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILI 233          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.120e-34
Identity = 89/209 (42.58%), Postives = 132/209 (63.16%), Query Frame = 3
Query:   21 ILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAI 632
            +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G +++   + L+    TTL+SK++   K    ++AV+AVL +    +   NL+ I V  K+GG L D+ L  G  +DK +   Q PKRIENAKI I
Sbjct:   38 LVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILI 239          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 79/212 (37.26%), Postives = 132/212 (62.26%), Query Frame = 3
Query:    9 TRARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            T A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y MA    +  L++I+   +  +N+ E ++    +++ +K+++R       IA+ AV  V   E  RK++++    +VE   GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L
Sbjct:   32 TIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVD--VNNREMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 241          
The following BLAST results are available for this feature:
BLAST of CX288192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
THS2_HALVO4.096e-3841.59Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSG_SULSH9.124e-3843.40Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPD_YARLI1.318e-3643.60T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
TCPG_OXYGR1.721e-3640.57T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPB_CAEEL5.007e-3641.51T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
THSB_HALSA8.540e-3640.76Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPG_SCHPO8.540e-3637.85T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPB_YEAST2.747e-3442.03T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPB_RAT6.120e-3442.58T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPG_MOUSE7.993e-3437.26T-complex protein 1 subunit gamma OS=Mus musculus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01017G03SK Veg1 Citrus clementina cDNA clone C01017G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288192 ID=CX288192; Name=CX288192; organism=Citrus clementina; type=EST; length=648bp
AATTCGGCACGAGGGCTCGGATCCTCCGAACCTCCCTCGGACCCAAAGGC
ATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACAAATGA
TGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGC
TGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATGGTACA
ACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAGAAGCT
TTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGAAATGG
CTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGTTTGAG
TTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACTACTTT
AAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGATTGCTG
TCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCAATTTA
GATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTGA
GCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATGC
CAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTG
back to top