CX288192

Overview
NameCX288192
Unique NameCX288192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 83/215 (38.60%), Postives = 129/215 (60.00%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV------ADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A I+++SLGP+G+DKML    GDVTITNDGATIL Q++V +  AK++VELS+ QD E+GDGTT VV++A  LL++A +L++  +HP  I  G+++A++ A  +   I +     + +L  E L+    T+++SK++       ++I V AV +V       D +    N+ +IK  G+       ++LI G  +       QM  RIE AKIA+L
Sbjct:   29 ANIVKSSLGPQGLDKMLVDDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTY---IKEHLAISVEELGREALINAAKTSMSSKLIGPESNLFSQIVVDAVESVKMTNLMGDTKYPIKNVKIIKSHGQ---STLQSQLIRGYVLQTQRCDQQMKTRIEKAKIALL 237          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 78/212 (36.79%), Postives = 130/212 (61.32%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV---ADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A  ++TSLGP G+DKML    GDVTITNDGATIL+ +DV++  AK++V+L++ QD E+GDGTT VV++A +LL+ A++L+ R +HP  +  GY +A R A ++++   +   + +N L    L+    T ++SK++N      +++AV A++AV      +     +  + +    G  + ++ LI G  ++   +  QMP+ I+ AKIA L
Sbjct:   26 ANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQ---EHMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAVEVSGGPKGPVYPIKAVNILKAHGRSMSESMLIDGYALNCTAASQQMPRIIKKAKIAFL 234          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 83/227 (36.56%), Postives = 131/227 (57.71%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND-LEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVA-------------DLERKDVNLDL---IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCP 644
            A I+R++LGP+ M KML  P G + ITNDG  IL ++DV +  AK M+ELSR+ D E+GDGTT V+++AG +L  AE  +   IHP  I  GY  A + A+   E  A   +   ++ ++ LVQ+C   + +K  +R    + ++A+KAVL V+             D+  + + +D+    KVE   GG + D  ++ G+  +KD++H +M +RIEN +I +L  P
Sbjct:   36 ADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQEALTICEEWALVVDVHDSERVKSLVQSC---IGAKFSSRWNDIMIDMALKAVLTVSRESRTPSFTPEANDVYAQKMEVDIKRYAKVEKIPGGEISDCAVLSGVMFNKDVTHSKMRRRIENPRILLLDTP 259          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 76/212 (35.85%), Postives = 129/212 (60.85%), Query Frame = 3
Query:    9 TRARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            T A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+       ++ + ++    +++ +K+++R       IA+ AV  V   E  RK++++    +VE   GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L
Sbjct:   32 TIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 241          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 79/214 (36.92%), Postives = 133/214 (62.15%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK-DVN-----LDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A I++TS GP G+DKML    G + +TNDGATIL+++D+++  AK++V+LS  QD E+GDGTT VV++A  LL++A +L+ R +HP  I  G+ +A   A++++ E +A K E    D   +V    T+++SK +N      ++I ++A+  V  ++ K DV      ++++K  GK     +++ L+ G  ++  ++   MPKRI+ AKIA L
Sbjct:   30 ANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDF--IVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDYKGDVKYPINAINILKAHGK---SAKESTLVEGYALNCTVASEGMPKRIQGAKIAFL 238          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.667e-31
Identity = 79/211 (37.44%), Postives = 125/211 (59.24%), Query Frame = 3
Query:   24 LRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFG----LNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSH---PQMPKRIENAKIAIL 635
            +RT+LGP G DK++    G+V I+NDGATI++ +D+ +  AK +V+++R+QD E+GDGTT VVV AG LL +A   +E G+    I  GY  A+++AV  ++ IA   +      L DL  L +   T +NSK++        ++ V AVL    L+++D+N ++I ++   GG +ED+ L+ G+   K  S+    Q PK  +N KI  L
Sbjct:   40 IRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDL--LTKCASTAMNSKLIRSNSTFFTKMVVDAVLT---LDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCL 245          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 80/215 (37.21%), Postives = 132/215 (61.40%), Query Frame = 3
Query:   21 ILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER----IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNL---DLIKVEGKVGGRLEDTELIYGITVDKDMSH---PQMPKRIENAKIAIL 635
            I++T+LGP+GMDK+++   G  TI+NDGATIL  +D+ +  AK +V+++++QD E+GDGTT V ++AG LL++++  +E G+HP  + +GY+ A ++A+  L+     +A K +      E L++   T+LNSK++   K   +E+ V+AV      E  D NL   DLI ++   GG + D+ L+ G+   K  S+    Q PK+  N KI +L
Sbjct:   35 IVKTTLGPRGMDKLIEGNRG-ATISNDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGYKEALKLALTFLQENSYSVADKSDG--EKREMLLKCAQTSLNSKLLAHYKEFFSEMVVQAV------ETLDTNLLDKDLIGIKMVTGGSVTDSVLVKGVAFKKTFSYAGFEQQPKKFANPKICLL 240          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 78/213 (36.62%), Postives = 126/213 (59.15%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVN------LDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            A ++++SLGP G+DKML    GDVT+TNDGATIL  +DV++   K++VEL++ QD E+GDGTT VV++A  LL +A +L++  IHP  I  GY +A R AV+ +  +       L   E L+    T+++SK++       + +AV A+L+V     K         ++++K  GK      ++ L+ G  ++  ++   M  R++NAKIA+L
Sbjct:   34 ANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGK-ESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSS---RESVLVKGYALNCTIASQAMKTRVQNAKIAVL 242          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.843e-31
Identity = 83/207 (40.10%), Postives = 125/207 (60.39%), Query Frame = 3
Query:   21 ILRTSLGPKGMDKMLQSPDG--DVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFG-LNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAI 632
            +++T+LGPKGMDK+L S     ++ ITNDGATIL ++ +DN  AK++V++SR+QD E+GDGTT V V+AG LL + E+L+++ +HP  I  G+ +A   A   L+   Q      +   E L+    TTL+SK+++  K   A + V AVL +      + NLD I +  K GG L ++ L  G  ++K +     PKR+EN KI I
Sbjct:   37 LVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDLLNIARTTLSSKILHTEKDHFANMVVDAVLRL----NGNTNLDNIHIIKKSGGSLRESYLDEGFILEKKIG-VGCPKRLENPKILI 238          
BLAST of CX288192 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.843e-31
Identity = 81/214 (37.85%), Postives = 130/214 (60.75%), Query Frame = 3
Query:   15 ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV------ADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAIL 635
            + I++TSLGP G+DKML    GDVTITNDGATIL  ++V++  AK++VEL+  QD E+GDGTT VV++A  LL++A  L+   IHP  I  GY +A R + +++ E++  K E  L  + PL+    T+++SK+++      A + V+AVL+V       +++     ++++K  G+      D+ L+ G  ++   +   MP R+  AKIA L
Sbjct:   32 SNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVE-KLGKV-PLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQ---SARDSYLLNGYALNTGRAAQGMPLRVSPAKIACL 240          
The following BLAST results are available for this feature:
BLAST of CX288192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TCPA_TETPY4.386e-3238.60T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPA_SCHMA4.386e-3236.79T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPG_THAWE7.482e-3236.56T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPG_BOVIN7.482e-3235.85T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPA_DICDI9.771e-3236.92T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPH_SCHPO1.667e-3137.44Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_TETPY2.177e-3137.21T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPA_SCHPO2.177e-3136.62T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPB_DICDI2.843e-3140.10T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPA_ARATH2.843e-3137.85T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC01017G03SK Veg1 Citrus clementina cDNA clone C01017G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288192 ID=CX288192; Name=CX288192; organism=Citrus clementina; type=EST; length=648bp
AATTCGGCACGAGGGCTCGGATCCTCCGAACCTCCCTCGGACCCAAAGGC
ATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACAAATGA
TGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGC
TGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATGGTACA
ACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAGAAGCT
TTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGAAATGG
CTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGTTTGAG
TTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACTACTTT
AAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGATTGCTG
TCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCAATTTA
GATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTGA
GCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATGC
CAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTG
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