CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_TOBAC (50S ribosomal protein L2, chloroplastic OS=Nicotiana tabacum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SOLTU (50S ribosomal protein L2, chloroplastic OS=Solanum tuberosum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SOLLC (50S ribosomal protein L2, chloroplastic OS=Solanum lycopersicum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SOLBU (50S ribosomal protein L2, chloroplastic OS=Solanum bulbocastanum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_PANGI (50S ribosomal protein L2, chloroplastic OS=Panax ginseng GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  235 RAPIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  235 RAPIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  235 RAPIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  235 RAPIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  235 RAPIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_TOBAC2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Nicotia... [more]
RK2_SOLTU2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_SOLLC2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_SOLBU2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_PANGI2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Panax g... [more]
RK2_OENPA2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENGL2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]

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Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
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