CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_NICTO (50S ribosomal protein L2, chloroplastic OS=Nicotiana tomentosiformis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_NICSY (50S ribosomal protein L2, chloroplastic OS=Nicotiana sylvestris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  238 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 276          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2B_ATRBE (50S ribosomal protein L2-B, chloroplastic OS=Atropa belladonna GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2A_COFAR (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_GOSBA (50S ribosomal protein L2, chloroplastic OS=Gossypium barbadense GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWG+PALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPATPWGHPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWG+PALGRRSRKR KYSDNLILRRRTK
Sbjct:  236 RAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRRTK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWG+PALGRRSRKR KYSDNLILRRRTK
Sbjct:  237 RAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRRTK 275          
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_NICTO2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Nicotia... [more]
RK2_NICSY2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Nicotia... [more]
RK2_DAUCA2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Daucus ... [more]
RK2B_COFAR2.224e-1592.3150S ribosomal protein L2-B, chloroplastic OS=Coffe... [more]
RK2B_ATRBE2.224e-1592.3150S ribosomal protein L2-B, chloroplastic OS=Atrop... [more]
RK2A_COFAR2.224e-1592.3150S ribosomal protein L2-A, chloroplastic OS=Coffe... [more]
RK2A_ATRBE2.224e-1592.3150S ribosomal protein L2-A, chloroplastic OS=Atrop... [more]
RK2_GOSBA2.905e-1592.3150S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2_PHAVU3.794e-1592.3150S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_PHAAN3.794e-1592.3150S ribosomal protein L2, chloroplastic OS=Phaseol... [more]

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Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
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