CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_LOTJA (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKR KYSDNLILRRRTK
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRSRKRKKYSDNLILRRRTK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKR KYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRKKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2B_SOYBN (50S ribosomal protein L2-B, chloroplastic OS=Glycine max GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWG+PALGRRSRKR KYSDNLILRRRTK
Sbjct:  236 RAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRRTK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWG+PALGRRSRKR KYSDNLILRRRTK
Sbjct:  236 RAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRRTK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.955e-15
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK P TPWGYPALGRRSRKRNKYSD+LILRRRTK
Sbjct:  242 RAPIGRKNPTTPWGYPALGRRSRKRNKYSDSLILRRRTK 280          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_HELAN (50S ribosomal protein L2, chloroplastic OS=Helianthus annuus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.955e-15
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALG+RSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGKRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_LACSA (50S ribosomal protein L2, chloroplastic OS=Lactuca sativa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALG+RSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKQPTTPWGYPALGKRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_RANMC (50S ribosomal protein L2, chloroplastic OS=Ranunculus macranthus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD+LILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_NANDO (50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD+LILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD+LILRRR+K
Sbjct:  234 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRRSK 272          
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_LOTJA3.794e-1592.3150S ribosomal protein L2, chloroplastic OS=Lotus j... [more]
RK2_EUCGG3.794e-1592.3150S ribosomal protein L2, chloroplastic OS=Eucalyp... [more]
RK2B_SOYBN3.794e-1592.3150S ribosomal protein L2-B, chloroplastic OS=Glyci... [more]
RK2A_SOYBN3.794e-1592.3150S ribosomal protein L2-A, chloroplastic OS=Glyci... [more]
RK2_PLAOC4.955e-1592.3150S ribosomal protein L2, chloroplastic OS=Platanu... [more]
RK2_HELAN4.955e-1589.7450S ribosomal protein L2, chloroplastic OS=Heliant... [more]
RK2_LACSA6.471e-1589.7450S ribosomal protein L2, chloroplastic OS=Lactuca... [more]
RK2_RANMC8.452e-1589.7450S ribosomal protein L2, chloroplastic OS=Ranuncu... [more]
RK2_NANDO8.452e-1589.7450S ribosomal protein L2, chloroplastic OS=Nandina... [more]
RK2_BUXMI8.452e-1589.7450S ribosomal protein L2, chloroplastic OS=Buxus m... [more]

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Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
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