CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P+TPWGYPALGRR+RK NKYSDNLILRRR+K
Sbjct:  235 RAPIGRKKPSTPWGYPALGRRTRKSNKYSDNLILRRRSK 273          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SPIOL (50S ribosomal protein L2, chloroplastic OS=Spinacia oleracea GN=rpl2-A PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK P TPWGYPALGRRSRKRNKYSDN I+RRR+K
Sbjct:  234 RAPIGRKSPTTPWGYPALGRRSRKRNKYSDNFIIRRRSK 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_JASNU (50S ribosomal protein L2, chloroplastic OS=Jasminum nudiflorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.212e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALG RSRKRNKYS+NLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGSRSRKRNKYSENLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SILLA (50S ribosomal protein L2, chloroplastic OS=Silene latifolia GN=rpl2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK P TPWGYPALG+RSRKRNKYSDN I+RRR+K
Sbjct:  236 RAPIGRKNPTTPWGYPALGKRSRKRNKYSDNFIIRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_PHAAO (50S ribosomal protein L2, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD+LILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD+LILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2A_LIRTU (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD+LILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.478e-14
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+PATPWGYPALGRRSRKRNKYSD  ILRRR
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRNKYSDRFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.478e-14
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRKRP TPWGYPALGRRSRKRNKYSD+ ILRRR
Sbjct:  238 RAPIGRKRPTTPWGYPALGRRSRKRNKYSDSFILRRR 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CERDE (50S ribosomal protein L2, chloroplastic OS=Ceratophyllum demersum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.155e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+PATPWGYPALGRRSRKR KYSD+LILRRR
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRKKYSDSLILRRR 272          
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_PEA1.883e-1487.1850S ribosomal protein L2, chloroplastic OS=Pisum s... [more]
RK2_SPIOL2.459e-1487.1850S ribosomal protein L2, chloroplastic OS=Spinaci... [more]
RK2_JASNU3.212e-1487.1850S ribosomal protein L2, chloroplastic OS=Jasminu... [more]
RK2_SILLA4.195e-1484.6250S ribosomal protein L2, chloroplastic OS=Silene ... [more]
RK2_PHAAO4.195e-1491.8950S ribosomal protein L2, chloroplastic OS=Phalaen... [more]
RK2B_LIRTU4.195e-1491.8950S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RK2A_LIRTU4.195e-1491.8950S ribosomal protein L2-A, chloroplastic OS=Lirio... [more]
RK2_PIPCE5.478e-1491.8950S ribosomal protein L2, chloroplastic OS=Piper c... [more]
RK2_ILLOL5.478e-1491.8950S ribosomal protein L2, chloroplastic OS=Illiciu... [more]
RK2_CERDE7.155e-1491.8950S ribosomal protein L2, chloroplastic OS=Ceratop... [more]

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Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
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