CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.344e-14
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            R+PIGRK+P TPWGYPALGRRSRKRNKYSD+LILRRR
Sbjct:  236 RSPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.344e-14
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            R+PIGRK+P TPWGYPALGRRSRKRNKYSD+LILRRR
Sbjct:  238 RSPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRR 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_EPIVI (50S ribosomal protein L2, plastid OS=Epifagus virginiana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRK NKYSDN I+RRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKINKYSDNFIVRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CALFG (50S ribosomal protein L2, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD+ ILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_AETGR (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRTRKRKKYSETLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRTRKRKKYSETLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ACOCL (50S ribosomal protein L2, chloroplastic OS=Acorus calamus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.594e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD  ILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDRFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ACOAM (50S ribosomal protein L2, chloroplastic OS=Acorus americanus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.594e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD  ILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDRFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SINAL (50S ribosomal protein L2, chloroplastic OS=Sinapis alba GN=rpl2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_OLIPU (50S ribosomal protein L2, chloroplastic OS=Olimarabidopsis pumila GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274          
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2B_CHLSC9.344e-1489.1950S ribosomal protein L2-B, chloroplastic OS=Chlor... [more]
RK2A_CHLSC9.344e-1489.1950S ribosomal protein L2-A, chloroplastic OS=Chlor... [more]
RK2_EPIVI1.220e-1384.6250S ribosomal protein L2, plastid OS=Epifagus virg... [more]
RK2_CALFG1.220e-1389.1950S ribosomal protein L2, chloroplastic OS=Calycan... [more]
RK2_AETGR1.220e-1384.6250S ribosomal protein L2, chloroplastic OS=Aethion... [more]
RK2_AETCO1.220e-1384.6250S ribosomal protein L2, chloroplastic OS=Aethion... [more]
RK2_ACOCL1.594e-1389.1950S ribosomal protein L2, chloroplastic OS=Acorus ... [more]
RK2_ACOAM1.594e-1389.1950S ribosomal protein L2, chloroplastic OS=Acorus ... [more]
RK2_SINAL3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Sinapis... [more]
RK2_OLIPU3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Olimara... [more]

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Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
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