CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD  ILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDIFILRRR 272
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_NUPAD (50S ribosomal protein L2, chloroplastic OS=Nuphar advena GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD  ILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDIFILRRR 272
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_NASOF (50S ribosomal protein L2, chloroplastic OS=Nasturtium officinale GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_LOBMA (50S ribosomal protein L2, chloroplastic OS=Lobularia maritima GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_LEPVR (50S ribosomal protein L2, chloroplastic OS=Lepidium virginicum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_DRANE (50S ribosomal protein L2, chloroplastic OS=Draba nemorosa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CRUWA (50S ribosomal protein L2, chloroplastic OS=Crucihimalaya wallichii GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CAPBU (50S ribosomal protein L2, chloroplastic OS=Capsella bursa-pastoris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ARATH (50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_NYMAL3.551e-1389.1950S ribosomal protein L2, chloroplastic OS=Nymphae... [more]
RK2_NUPAD3.551e-1389.1950S ribosomal protein L2, chloroplastic OS=Nuphar ... [more]
RK2_NASOF3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Nasturt... [more]
RK2_LOBMA3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Lobular... [more]
RK2_LEPVR3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Lepidiu... [more]
RK2_DRANE3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Draba n... [more]
RK2_CRUWA3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Crucihi... [more]
RK2_CAPBU3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Capsell... [more]
RK2_ARATH3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Arabido... [more]
RK2_ARAHI3.551e-1382.0550S ribosomal protein L2, chloroplastic OS=Arabis ... [more]

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Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
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