CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_DRIGR (50S ribosomal protein L2, chloroplastic OS=Drimys granadensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.638e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKRNKYSD  ILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDIYILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRKR KYSD+ ILRRR
Sbjct:  237 RAPIGRKKPTTPWGYPALGRRSRKRKKYSDSFILRRR 273          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_BARVE (50S ribosomal protein L2, chloroplastic OS=Barbarea verna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRR+RKR KYS+ +ILRRR+K
Sbjct:  236 RAPIGRKKPVTPWGYPALGRRTRKRKKYSETMILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_IPOPU (50S ribosomal protein L2, chloroplastic OS=Ipomoea purpurea GN=rpl2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.911e-13
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGR+SRKRNKYS+  ILR R+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRKSRKRNKYSEKFILRHRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_AMBTC (50S ribosomal protein L2, chloroplastic OS=Amborella trichopoda GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGYPALGRRSRK+ KYSD+ ILRRR
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKKKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_MARPO (50S ribosomal protein L2, chloroplastic OS=Marchantia polymorpha GN=rpl2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWG+PALG+RSRK NKYSD LILRRR
Sbjct:  238 RAPIGRKKPLTPWGHPALGKRSRKNNKYSDTLILRRR 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_WHEAT (50S ribosomal protein L2, chloroplastic OS=Triticum aestivum GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SORBI (50S ribosomal protein L2, chloroplastic OS=Sorghum bicolor GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  234 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 270          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_DRIGR4.638e-1389.1950S ribosomal protein L2, chloroplastic OS=Drimys ... [more]
RK2_DIOEL6.057e-1386.4950S ribosomal protein L2, chloroplastic OS=Dioscor... [more]
RK2_BARVE6.057e-1379.4950S ribosomal protein L2, chloroplastic OS=Barbare... [more]
RK2_IPOPU7.911e-1379.4950S ribosomal protein L2, chloroplastic OS=Ipomoea... [more]
RK2_AMBTC1.349e-1283.7850S ribosomal protein L2, chloroplastic OS=Amborel... [more]
RK2_MARPO2.302e-1283.7850S ribosomal protein L2, chloroplastic OS=Marchan... [more]
RK2_WHEAT3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Triticu... [more]
RK2_SORBI3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Sorghum... [more]
RK2_SACOF3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_SACHY3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
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