CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ORYSJ (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ORYSI (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ORYSA (50S ribosomal protein L2, chloroplastic OS=Oryza sativa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ORYNI (50S ribosomal protein L2, chloroplastic OS=Oryza nivara GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_MAIZE (50S ribosomal protein L2, chloroplastic OS=Zea mays GN=rpl2-A PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_LOLPR (50S ribosomal protein L2, chloroplastic OS=Lolium perenne GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_HORVU (50S ribosomal protein L2, chloroplastic OS=Hordeum vulgare GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CUSEX (50S ribosomal protein L2, plastid OS=Cuscuta exaltata GN=rpl2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK*ER 127
            RAPIGRK+P TPWGYPALGR++RK NKYSD  ILR R K +R
Sbjct:  236 RAPIGRKKPTTPWGYPALGRKTRKGNKYSDKFILRHRRKQQR 277          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_AGRST (50S ribosomal protein L2, chloroplastic OS=Agrostis stolonifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            +APIGRK+P TPWGYPALGRR+RKR KYSD+ ILRRR
Sbjct:  236 KAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.926e-12
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            +APIGRK+PATPWG PALG R+RKR KY+DNLILRRR+K
Sbjct:  236 KAPIGRKKPATPWGRPALGIRTRKRKKYNDNLILRRRSK 274          
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_ORYSJ3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYSI3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYSA3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYNI3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Oryza n... [more]
RK2_MAIZE3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Zea may... [more]
RK2_LOLPR3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Lolium ... [more]
RK2_HORVU3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Hordeum... [more]
RK2_CUSEX3.006e-1273.8150S ribosomal protein L2, plastid OS=Cuscuta exalt... [more]
RK2_AGRST3.006e-1281.0850S ribosomal protein L2, chloroplastic OS=Agrosti... [more]
RK2_PELHO3.926e-1279.4950S ribosomal protein L2, chloroplastic OS=Pelargo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
back to top