CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor GN=rpl2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRKRP TPWGYPALG+RSRK+ +YSD  ILRRR
Sbjct:  236 RAPIGRKRPMTPWGYPALGKRSRKKKRYSDRFILRRR 272          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_ANEMR (50S ribosomal protein L2, plastid OS=Aneura mirabilis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            + PIGRK+P TPWG+PALGR+SRKR KYSD LILRRR
Sbjct:  245 KVPIGRKKPLTPWGHPALGRKSRKRRKYSDTLILRRR 281          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CRYJA (50S ribosomal protein L2, chloroplastic OS=Cryptomeria japonica GN=rpl2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.324e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRK+P TPWGY ALG++SRKRNKYSD  ILRRR
Sbjct:  240 RAPIGRKKPLTPWGYSALGKKSRKRNKYSDVSILRRR 276          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CUSRE (50S ribosomal protein L2, plastid OS=Cuscuta reflexa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGR++RK NKYS+  I+R R K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRKTRKVNKYSEKFIIRHRRK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CHLAT (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGR +P TPWG+PALG+R+RKRNKYS+ LI+RRR
Sbjct:  238 RAPIGRSKPVTPWGHPALGKRTRKRNKYSNALIIRRR 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_STAPU (50S ribosomal protein L2, chloroplastic OS=Staurastrum punctulatum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            RAPIGRKRP TPWG P LGRRSR R+KYS+ LILRRR
Sbjct:  238 RAPIGRKRPLTPWGRPTLGRRSRPRHKYSEALILRRR 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 112
            R PIGRK+P TPWGY ALGR+SRK NKYSD  ILRRR
Sbjct:  239 RTPIGRKKPVTPWGYAALGRKSRKNNKYSDASILRRR 275          
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_LEMMI5.127e-1281.0850S ribosomal protein L2, chloroplastic OS=Lemna m... [more]
RK2_ANEMR1.948e-1178.3850S ribosomal protein L2, plastid OS=Aneura mirabi... [more]
RK2_CRYJA3.324e-1181.0850S ribosomal protein L2, chloroplastic OS=Cryptom... [more]
RK2_CUSRE4.341e-1171.7950S ribosomal protein L2, plastid OS=Cuscuta refle... [more]
RK2_CHLAT4.341e-1175.6850S ribosomal protein L2, chloroplastic OS=Chlorok... [more]
RK2_STAPU9.670e-1181.0850S ribosomal protein L2, chloroplastic OS=Stauras... [more]
RK2_CYCTA9.670e-1178.3850S ribosomal protein L2, chloroplastic OS=Cycas t... [more]

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Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
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