CX288203

Overview
NameCX288203
Unique NameCX288203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_STAA8 (Elongation factor Tu OS=Staphylococcus aureus (strain NCTC 8325) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R   + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  279 LRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_STAA3 (Elongation factor Tu OS=Staphylococcus aureus (strain USA300) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R   + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  279 LRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_STAA2 (Elongation factor Tu OS=Staphylococcus aureus (strain JH1) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R   + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  279 LRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_STAA1 (Elongation factor Tu OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R   + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  279 LRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_SILST (Elongation factor Tu OS=Silicibacter sp. (strain TM1040) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++  ++RG VL KPG++TPHTKF A  Y+L KEEGGRH+PFFA YRPQFY RTTDVTG V+       E ++MVMPGD +K  VELI P+A E G+RFAIREGG+TVGAGV+  I+
Sbjct:  276 LRGIDREAVERGQVLCKPGSVTPHTKFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVT-----LPEGTEMVMPGDNLKFEVELIAPIAMEDGLRFAIREGGRTVGAGVVSKIL 390          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_SHESH (Elongation factor Tu OS=Shewanella sediminis (strain HAW-EB3) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D++RG VLA PG+ITPHT F + +YVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD V M V LI P+A ++G+RFAIREGG+TVGAGV+  I+
Sbjct:  279 LRGTKREDVERGQVLAAPGSITPHTTFKSEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVAMTVTLICPIAMDEGLRFAIREGGRTVGAGVVAEIV 393          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_SACD2 (Elongation factor Tu OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D++RG VL+KPG++TPHT F + +YVL K+EGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD V+M V LI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  292 LRGTKRDDVERGQVLSKPGSVTPHTTFQSEIYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAC-----ELPEGVEMVMPGDNVQMTVTLIAPIAMEEGLRFAIREGGRTVGAGVVAKII 406          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_PSESM (Elongation factor Tu OS=Pseudomonas syringae pv. tomato GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 74/120 (61.67%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D++RG VL KPGT+ PHT+F A +YVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD VK+ V LI P+A E G+RFAIREGG+TVGAGV+  II
Sbjct:  282 LRGTKRDDVERGQVLVKPGTVKPHTQFEAEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNVKVSVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKII 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_PSE14 (Elongation factor Tu OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 74/120 (61.67%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D++RG VL KPGT+ PHT+F A +YVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD VK+ V LI P+A E G+RFAIREGG+TVGAGV+  II
Sbjct:  282 LRGTKRDDVERGQVLVKPGTVKPHTQFEAEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNVKVSVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKII 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 360
            +R  ++ D++RGMV+AKPGT TPHT F A VY+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD  +M VELI P+A ++G+RFAIREGG+TVGAG +  I
Sbjct:  282 LRGTKREDVERGMVVAKPGTTTPHTNFEASVYILSKEEGGRHTPFFNNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNTEMAVELIQPIAMDEGLRFAIREGGRTVGAGRVTKI 395          
The following BLAST results are available for this feature:
BLAST of CX288203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STAA81.370e-3661.98Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAA31.370e-3661.98Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAA21.370e-3661.98Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAA11.370e-3661.98Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_SILST1.370e-3660.83Elongation factor Tu OS=Silicibacter sp. (strain T... [more]
EFTU_SHESH1.370e-3660.00Elongation factor Tu OS=Shewanella sediminis (stra... [more]
EFTU_SACD21.370e-3660.00Elongation factor Tu OS=Saccharophagus degradans (... [more]
EFTU_PSESM1.370e-3661.67Elongation factor Tu OS=Pseudomonas syringae pv. t... [more]
EFTU_PSE141.370e-3661.67Elongation factor Tu OS=Pseudomonas syringae pv. p... [more]
EFTU_NOCSJ1.370e-3661.34Elongation factor Tu OS=Nocardioides sp. (strain B... [more]

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Properties
Property NameValue
Genbank descriptionC01017H03SK Veg1 Citrus clementina cDNA clone C01017H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288203 ID=CX288203; Name=CX288203; organism=Citrus clementina; type=EST; length=514bp
CGAATTCGGCACGAGGAAAAGGCTGATATTCAGAGAGGGATGGTGTTGGC
CAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTGGCCATTGTGTATG
TGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTTTGCGGGTTAC
AGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAAGGGTGTCTTC
TATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCTGGCGACC
GTGTCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTGTGAGCAAGGG
ATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAGCTGGTGTTAT
TCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGGGCAGTGGATT
ATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTTAAGTTTTTAT
GGAATTAGTTTCACCATTCTAGGAAAAAAAAACGGCACGAGGCCTCGTGC
CGGGGGGGCCCGGT
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