CX288203

Overview
NameCX288203
Unique NameCX288203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBT (Elongation factor Tu OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 75/119 (63.03%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 360
            +R  ++ ++QRG VLAKPGTI PHTKF A VYVL KEEGGRH+PF  GYRPQFY RTTDVTG +        E  +MVMPGD V+M VELI P+A + G+RFAIREGG+TVGAGV+  +
Sbjct:  281 LRGTKREEVQRGQVLAKPGTIKPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAI-----QLKEGVEMVMPGDNVEMSVELIHPIAMDPGLRFAIREGGRTVGAGVVAKV 394          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_ACIB3 (Elongation factor Tu OS=Acinetobacter baumannii (strain AB307-0294) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 75/119 (63.03%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 360
            +R  ++ ++QRG VLAKPGTI PHTKF A VYVL KEEGGRH+PF  GYRPQFY RTTDVTG +        E  +MVMPGD V+M VELI P+A + G+RFAIREGG+TVGAGV+  +
Sbjct:  281 LRGTKREEVQRGQVLAKPGTIKPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAI-----QLKEGVEMVMPGDNVEMSVELIHPIAMDPGLRFAIREGGRTVGAGVVAKV 394          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU2_SYNWW (Elongation factor Tu 2 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +++RGMVLAKPG+I P T F A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD V+M +ELI P+A E+G+RFAIREGG+TVGAGV+ S+ E
Sbjct:  285 LRGVDRKEVERGMVLAKPGSIKPLTAFNAEVYVLTKEEGGRHTPFFGGYRPQFYFRTTDVTGII-----QLPEGVEMVMPGDNVQMAIELITPIAIEEGLRFAIREGGRTVGAGVVTSLNE 400          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_SYNWW (Elongation factor Tu 1 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +++RGMVLAKPG+I P T F A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD V+M +ELI P+A E+G+RFAIREGG+TVGAGV+ S+ E
Sbjct:  285 LRGVDRKEVERGMVLAKPGSIKPLTAFNAEVYVLTKEEGGRHTPFFGGYRPQFYFRTTDVTGII-----QLPEGVEMVMPGDNVQMAIELITPIAIEEGLRFAIREGGRTVGAGVVTSLNE 400          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_RALSO (Elongation factor Tu OS=Ralstonia solanacearum GN=tufA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VL KPG+I PHT F   VY+L K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  281 LRGTKREDVERGQVLCKPGSIKPHTHFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_POLSQ (Elongation factor Tu OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 75/120 (62.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ +++RG VLAKPG+ITPHT F A VY+L K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  I+
Sbjct:  281 LRGTKREEVERGQVLAKPGSITPHTHFTAEVYILGKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVTITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 395          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBP (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tuf PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  +K DI+RG VLAKPGTITPH KF A VYVL K+EGGRH+PFF  YRPQFY RTTD+TG V ++    +    MVMPGD V M +ELI P+A +QG++FAIREGG+T+G+GV+  I+E
Sbjct:  286 LRGTKKEDIERGQVLAKPGTITPHRKFKAEVYVLTKDEGGRHTPFFNNYRPQFYFRTTDITG-VCNLPGGME----MVMPGDNVTMSIELIHPIAMDQGLKFAIREGGRTIGSGVVAEIVE 401          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBA (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tuf PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  +K DI+RG VLAKPGTITPH KF A VYVL K+EGGRH+PFF  YRPQFY RTTD+TG V ++    +    MVMPGD V M +ELI P+A +QG++FAIREGG+T+G+GV+  I+E
Sbjct:  286 LRGTKKEDIERGQVLAKPGTITPHRKFKAEVYVLTKDEGGRHTPFFNNYRPQFYFRTTDITG-VCNLPGGME----MVMPGDNVTMSIELIHPIAMDQGLKFAIREGGRTIGSGVVAEIVE 401          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_HELAH (Elongation factor Tu OS=Helicobacter acinonychis (strain Sheeba) GN=tuf PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  +K +++RGMVL KPG+ITPH KF   +YVL KEEGGRH+PFF  YRPQFY+RTTDVTG ++       E  +MVMPGD VK+ VELI  +A E G +FAIREGG+TVGAGV+ +IIE
Sbjct:  284 LRGTKKEEVERGMVLCKPGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSIT-----LPEGVEMVMPGDNVKITVELINSIALELGTKFAIREGGRTVGAGVVSNIIE 399          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_ERWCT (Elongation factor Tu OS=Erwinia carotovora subsp. atroseptica GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ +I+RG VLAKPG+I PHT+F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  279 LRGIKREEIERGQVLAKPGSIKPHTQFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
The following BLAST results are available for this feature:
BLAST of CX288203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ACIBT1.370e-3663.03Elongation factor Tu OS=Acinetobacter baumannii (s... [more]
EFTU_ACIB31.370e-3663.03Elongation factor Tu OS=Acinetobacter baumannii (s... [more]
EFTU2_SYNWW1.370e-3661.98Elongation factor Tu 2 OS=Syntrophomonas wolfei su... [more]
EFTU1_SYNWW1.370e-3661.98Elongation factor Tu 1 OS=Syntrophomonas wolfei su... [more]
EFTU_RALSO1.789e-3661.98Elongation factor Tu OS=Ralstonia solanacearum GN=... [more]
EFTU_POLSQ1.789e-3662.50Elongation factor Tu OS=Polynucleobacter sp. (stra... [more]
EFTU_LEPBP1.789e-3661.16Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_LEPBA1.789e-3661.16Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_HELAH1.789e-3661.16Elongation factor Tu OS=Helicobacter acinonychis (... [more]
EFTU_ERWCT1.789e-3660.00Elongation factor Tu OS=Erwinia carotovora subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC01017H03SK Veg1 Citrus clementina cDNA clone C01017H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288203 ID=CX288203; Name=CX288203; organism=Citrus clementina; type=EST; length=514bp
CGAATTCGGCACGAGGAAAAGGCTGATATTCAGAGAGGGATGGTGTTGGC
CAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTGGCCATTGTGTATG
TGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTTTGCGGGTTAC
AGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAAGGGTGTCTTC
TATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCTGGCGACC
GTGTCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTGTGAGCAAGGG
ATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAGCTGGTGTTAT
TCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGGGCAGTGGATT
ATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTTAAGTTTTTAT
GGAATTAGTTTCACCATTCTAGGAAAAAAAAACGGCACGAGGCCTCGTGC
CGGGGGGGCCCGGT
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