CX288203

Overview
NameCX288203
Unique NameCX288203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_ENT38 (Elongation factor Tu OS=Enterobacter sp. (strain 638) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ +I+RG VLAKPG+I PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD ++MVV LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  279 LRGIKREEIERGQVLAKPGSIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIQMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_CLOK5 (Elongation factor Tu OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 73/121 (60.33%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +I+RG VL+KPG++ PH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +S       E  +MVMPGD + M VELI PVA  +G+RFAIREGG+TVG+GV+ ++ E
Sbjct:  282 LRGIQREEIERGQVLSKPGSVKPHKKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSIS-----LPEGVEMVMPGDHIDMNVELITPVAMHEGLRFAIREGGRTVGSGVVTTVSE 397          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_ANADF (Elongation factor Tu OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +++RG VLAKPG+ITPHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG V           +MVMPGD + M VELI P+A E+ +RFAIREGG+TVGAGV+  +I+
Sbjct:  281 LRGLKREEVERGQVLAKPGSITPHTKFKAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGSV-----QLPAGVEMVMPGDNIGMEVELITPIAMEKELRFAIREGGRTVGAGVVAEVIQ 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBL (Elongation factor Tu OS=Acidobacteria bacterium (strain Ellin345) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1
Query:   19 KADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            K D++RGMVLAK G+ITPHTKF   VYVL KEEGGRH+PFF GYRPQFY RTTDVTG V+++       ++MVMPGD V + +ELI PVA E+G+RFAIREGG+TVGAG I  II
Sbjct:  285 KDDVERGMVLAKGGSITPHTKFKGEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTG-VATL----PAGTEMVMPGDNVALEIELITPVAMEKGLRFAIREGGRTVGAGTISEII 394          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU2_NITEC (Elongation factor Tu 2 OS=Nitrosomonas eutropha (strain C91) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +++RG VLAKPG+I PHTKF A +YVL KEEGGRH+PFFAGYRPQFY RTTDVTG +     +     +MVMPGD + + V LI P+A   G+RFAIREGG+TVGAGV+  +IE
Sbjct:  281 LRGTKREEVERGQVLAKPGSILPHTKFSAEIYVLSKEEGGRHTPFFAGYRPQFYFRTTDVTGSI-----ELPAGVEMVMPGDNISVNVNLIAPIAMSDGLRFAIREGGRTVGAGVVAKVIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOFD (Elongation factor Tu 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.789e-36
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D+QRG VL KPG+I PHT F   +YVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +  E  +MVMPGD V ++V+LI P+A E+G+RFAIREGGKTVGAGV+  II
Sbjct:  281 LRGTKREDVQRGQVLCKPGSIKPHTHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPEGKEMVMPGDNVSIIVKLINPIAMEEGLRFAIREGGKTVGAGVVAKII 395          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_SHEPA (Elongation factor Tu OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.336e-36
Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D++RG VLA PG+ITPHT F + +YVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD V M V LI P+A ++G+RFAIREGG+TVGAGV+  I+
Sbjct:  279 LRGIKREDVERGQVLAAPGSITPHTTFKSEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVAMTVTLICPIAMDEGLRFAIREGGRTVGAGVVAEIV 393          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_SHEHH (Elongation factor Tu OS=Shewanella halifaxensis (strain HAW-EB4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.336e-36
Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D++RG VLA PG+ITPHT F + +YVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD V M V LI P+A ++G+RFAIREGG+TVGAGV+  I+
Sbjct:  279 LRGIKREDVERGQVLAAPGSITPHTTFKSEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVAMTVTLIAPIAMDEGLRFAIREGGRTVGAGVVAEIV 393          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_RHOP2 (Elongation factor Tu OS=Rhodopseudomonas palustris (strain HaA2) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.336e-36
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  281 LRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_PARDP (Elongation factor Tu OS=Paracoccus denitrificans (strain Pd 1222) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.336e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  E+  ++RG VLAKPG++TPHT+F A  Y+L KEEGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD +K  VELI P+A E+ +RFAIREGG+TVGAGV+  I++
Sbjct:  276 LRGVERDGVERGQVLAKPGSVTPHTEFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVK-----LPEGTEMVMPGDNLKFEVELIAPIAMEEKLRFAIREGGRTVGAGVVSKILK 391          
The following BLAST results are available for this feature:
BLAST of CX288203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ENT381.789e-3660.00Elongation factor Tu OS=Enterobacter sp. (strain 6... [more]
EFTU_CLOK51.789e-3660.33Elongation factor Tu OS=Clostridium kluyveri (stra... [more]
EFTU_ANADF1.789e-3661.98Elongation factor Tu OS=Anaeromyxobacter sp. (stra... [more]
EFTU_ACIBL1.789e-3666.96Elongation factor Tu OS=Acidobacteria bacterium (s... [more]
EFTU2_NITEC1.789e-3659.50Elongation factor Tu 2 OS=Nitrosomonas eutropha (s... [more]
EFTU1_RHOFD1.789e-3660.00Elongation factor Tu 1 OS=Rhodoferax ferrireducens... [more]
EFTU_SHEPA2.336e-3660.00Elongation factor Tu OS=Shewanella pealeana (strai... [more]
EFTU_SHEHH2.336e-3660.00Elongation factor Tu OS=Shewanella halifaxensis (s... [more]
EFTU_RHOP22.336e-3660.33Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_PARDP2.336e-3660.33Elongation factor Tu OS=Paracoccus denitrificans (... [more]

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Properties
Property NameValue
Genbank descriptionC01017H03SK Veg1 Citrus clementina cDNA clone C01017H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288203 ID=CX288203; Name=CX288203; organism=Citrus clementina; type=EST; length=514bp
CGAATTCGGCACGAGGAAAAGGCTGATATTCAGAGAGGGATGGTGTTGGC
CAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTGGCCATTGTGTATG
TGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTTTGCGGGTTAC
AGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAAGGGTGTCTTC
TATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCTGGCGACC
GTGTCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTGTGAGCAAGGG
ATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAGCTGGTGTTAT
TCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGGGCAGTGGATT
ATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTTAAGTTTTTAT
GGAATTAGTTTCACCATTCTAGGAAAAAAAAACGGCACGAGGCCTCGTGC
CGGGGGGGCCCGGT
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