CX288203

Overview
NameCX288203
Unique NameCX288203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOPS (Elongation factor Tu 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.336e-36
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  281 LRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_THIDA (Elongation factor Tu OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.051e-36
Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ ++QRG VLAKPG+I PHTKF A +YVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +    ++MVMPGD V + V LI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  281 LRGTKREEVQRGQVLAKPGSIKPHTKFSAEIYVLSKDEGGRHTPFFNGYRPQFYFRTTDVTGSI-----ELPAGTEMVMPGDNVSIKVSLIQPIAMDEGLRFAIREGGRTVGAGVVAKIEE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_THICU (Elongation factor Tu OS=Thiobacillus cuprinus GN=tuf PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.051e-36
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +++RG VL KPG+I PHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +  ++ +MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  281 LRGTKREEVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPKDKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_SHESA (Elongation factor Tu OS=Shewanella sp. (strain ANA-3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.051e-36
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 360
            +R  ++ D++RG VL+KPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A ++G+RFAIREGG+TVGAGV+  I
Sbjct:  279 LRGTKRDDVERGQVLSKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMKVTLICPIAMDEGLRFAIREGGRTVGAGVVAKI 392          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESR (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-7) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.051e-36
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 360
            +R  ++ D++RG VL+KPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A ++G+RFAIREGG+TVGAGV+  I
Sbjct:  279 LRGTKRDDVERGQVLSKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMKVTLICPIAMDEGLRFAIREGGRTVGAGVVAKI 392          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESM (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.051e-36
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 360
            +R  ++ D++RG VL+KPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A ++G+RFAIREGG+TVGAGV+  I
Sbjct:  279 LRGTKRDDVERGQVLSKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMKVTLICPIAMDEGLRFAIREGGRTVGAGVVAKI 392          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_SHEON (Elongation factor Tu 1 OS=Shewanella oneidensis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.051e-36
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 360
            +R  ++ D++RG VL+KPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A ++G+RFAIREGG+TVGAGV+  I
Sbjct:  279 LRGTKRDDVERGQVLSKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMKVTLICPIAMDEGLRFAIREGGRTVGAGVVAKI 392          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_PSEU2 (Elongation factor Tu OS=Pseudomonas syringae pv. syringae (strain B728a) GN=tuf PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.985e-36
Identity = 73/120 (60.83%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D++RG VL KPG++ PHT+F A +YVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD VK+ V LI P+A E G+RFAIREGG+TVGAGV+  II
Sbjct:  282 LRGTKRDDVERGQVLVKPGSVKPHTQFEAEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNVKVSVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKII 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_POLSJ (Elongation factor Tu OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.985e-36
Identity = 72/120 (60.00%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ D+QRG VL KPG+I PHT F   +YVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +  E  +MVMPGD V + V+LI P+A E+G+RFAIREGGKTVGAGV+  II
Sbjct:  281 LRGTKREDVQRGQVLCKPGSIKPHTHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPEGKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGKTVGAGVVAKII 395          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_LISW6 (Elongation factor Tu OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=tuf PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.985e-36
Identity = 74/119 (62.18%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 360
            +R   + DIQRG VLAKPG+ITPHT F A  YVL KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD +++ VELI P+A E G +F+IREGG+TVGAGV+ +I
Sbjct:  280 LRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSNI 393          
The following BLAST results are available for this feature:
BLAST of CX288203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_RHOPS2.336e-3660.33Elongation factor Tu 1 OS=Rhodopseudomonas palustr... [more]
EFTU_THIDA3.051e-3659.50Elongation factor Tu OS=Thiobacillus denitrificans... [more]
EFTU_THICU3.051e-3658.68Elongation factor Tu OS=Thiobacillus cuprinus GN=t... [more]
EFTU_SHESA3.051e-3660.50Elongation factor Tu OS=Shewanella sp. (strain ANA... [more]
EFTU1_SHESR3.051e-3660.50Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_SHESM3.051e-3660.50Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_SHEON3.051e-3660.50Elongation factor Tu 1 OS=Shewanella oneidensis GN... [more]
EFTU_PSEU23.985e-3660.83Elongation factor Tu OS=Pseudomonas syringae pv. s... [more]
EFTU_POLSJ3.985e-3660.00Elongation factor Tu OS=Polaromonas sp. (strain JS... [more]
EFTU_LISW63.985e-3662.18Elongation factor Tu OS=Listeria welshimeri serova... [more]

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Properties
Property NameValue
Genbank descriptionC01017H03SK Veg1 Citrus clementina cDNA clone C01017H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288203 ID=CX288203; Name=CX288203; organism=Citrus clementina; type=EST; length=514bp
CGAATTCGGCACGAGGAAAAGGCTGATATTCAGAGAGGGATGGTGTTGGC
CAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTGGCCATTGTGTATG
TGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTTTGCGGGTTAC
AGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAAGGGTGTCTTC
TATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCTGGCGACC
GTGTCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTGTGAGCAAGGG
ATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAGCTGGTGTTAT
TCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGGGCAGTGGATT
ATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTTAAGTTTTTAT
GGAATTAGTTTCACCATTCTAGGAAAAAAAAACGGCACGAGGCCTCGTGC
CGGGGGGGCCCGGT
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