CX288203

Overview
NameCX288203
Unique NameCX288203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU2_BARBK (Elongation factor Tu 2 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.985e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++  I+RG VLAKPG++TPHTKF A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAG++  IIE
Sbjct:  276 LRGIDREGIERGQVLAKPGSVTPHTKFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNVAMDVSLIVPIAMEEKLRFAIREGGRTVGAGIVSKIIE 391          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_BARBK (Elongation factor Tu 1 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.985e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++  I+RG VLAKPG++TPHTKF A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAG++  IIE
Sbjct:  276 LRGIDREGIERGQVLAKPGSVTPHTKFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNVAMDVSLIVPIAMEEKLRFAIREGGRTVGAGIVSKIIE 391          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_THENN (Elongation factor Tu OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=tuf PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  +K +++RG VLA PG+I PH +F A VYVLKKEEGGRH+PF  GY+PQFY+RT DVTG +  +     E  +MVMPGD V+M +ELI PVA E+G RFAIREGG+TVGAGV+  +IE
Sbjct:  284 LRGIDKDEVERGQVLAAPGSIKPHKRFKAEVYVLKKEEGGRHTPFTKGYKPQFYIRTADVTGEIVGL----PEGVEMVMPGDHVEMEIELIYPVAIEKGQRFAIREGGRTVGAGVVTEVIE 400          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_SYMTH (Elongation factor Tu OS=Symbiobacterium thermophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 72/121 (59.50%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  EK +++RG VLAKPG+I PHTKF   +YVL KEEGGRHSPFF GYRPQFY RTTDVTG +        E  +MVMPGD V++ VELI P+A E+G+RFA+REGG+TV +G +  + E
Sbjct:  280 LRGIEKKEVERGQVLAKPGSIKPHTKFSGAIYVLTKEEGGRHSPFFNGYRPQFYFRTTDVTGTIK-----LPEGVEMVMPGDNVEIAVELIHPIAIEEGLRFAVREGGRTVASGRVTKVSE 395          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPA (Elongation factor Tu OS=Rhodopseudomonas palustris GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ +IIE
Sbjct:  281 LRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVAAIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_METSB (Elongation factor Tu OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=tuf PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VL KPG++ PHTKF A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V M VELI P+A E+ +RFAIREGG+TVGAGV+ SI E
Sbjct:  281 LRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNVTMDVELIAPIAMEEKLRFAIREGGRTVGAGVVASITE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_MESSB (Elongation factor Tu OS=Mesorhizobium sp. (strain BNC1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++  ++RG VLAKPG++TPHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAG++ SI E
Sbjct:  276 LRGIDREGVERGQVLAKPGSVTPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNVTMDVTLIVPIAMEERLRFAIREGGRTVGAGIVASITE 391          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_BACSU (Elongation factor Tu OS=Bacillus subtilis GN=tuf PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R   + +IQRG VLAKPGTITPH+KF A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG +        E  +MVMPGD  +M VELI  +A E+G RF+IREGG+TVG+GV+ +I E
Sbjct:  281 LRGVSREEIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGII-----HLPEGVEMVMPGDNTEMNVELISTIAIEEGTRFSIREGGRTVGSGVVSTITE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_AZOC5 (Elongation factor Tu OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG V+ KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD + + V+LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  282 LRGTKREDVERGQVVCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNISVDVQLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 397          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPS (Elongation factor Tu 2 OS=Yersinia pseudotuberculosis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 71/120 (59.17%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ DI+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M+V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  279 LRGIKREDIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMIVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
The following BLAST results are available for this feature:
BLAST of CX288203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_BARBK3.985e-3660.33Elongation factor Tu 2 OS=Bartonella bacilliformis... [more]
EFTU1_BARBK3.985e-3660.33Elongation factor Tu 1 OS=Bartonella bacilliformis... [more]
EFTU_THENN5.205e-3660.33Elongation factor Tu OS=Thermotoga neapolitana (st... [more]
EFTU_SYMTH5.205e-3659.50Elongation factor Tu OS=Symbiobacterium thermophil... [more]
EFTU_RHOPA5.205e-3659.50Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_METSB5.205e-3660.33Elongation factor Tu OS=Methylocella silvestris (s... [more]
EFTU_MESSB5.205e-3660.33Elongation factor Tu OS=Mesorhizobium sp. (strain ... [more]
EFTU_BACSU5.205e-3661.98Elongation factor Tu OS=Bacillus subtilis GN=tuf P... [more]
EFTU_AZOC55.205e-3658.68Elongation factor Tu OS=Azorhizobium caulinodans (... [more]
EFTU2_YERPS5.205e-3659.17Elongation factor Tu 2 OS=Yersinia pseudotuberculo... [more]

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Properties
Property NameValue
Genbank descriptionC01017H03SK Veg1 Citrus clementina cDNA clone C01017H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288203 ID=CX288203; Name=CX288203; organism=Citrus clementina; type=EST; length=514bp
CGAATTCGGCACGAGGAAAAGGCTGATATTCAGAGAGGGATGGTGTTGGC
CAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTGGCCATTGTGTATG
TGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTTTGCGGGTTAC
AGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAAGGGTGTCTTC
TATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCTGGCGACC
GTGTCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTGTGAGCAAGGG
ATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAGCTGGTGTTAT
TCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGGGCAGTGGATT
ATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTTAAGTTTTTAT
GGAATTAGTTTCACCATTCTAGGAAAAAAAAACGGCACGAGGCCTCGTGC
CGGGGGGGCCCGGT
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