CX288203

Overview
NameCX288203
Unique NameCX288203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_RHOP5 (Elongation factor Tu OS=Rhodopseudomonas palustris (strain BisA53) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  281 LRGTKREEVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_RALEH (Elongation factor Tu OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VL KPG+I PHT F   VY+L K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  281 LRGTKREDVERGQVLCKPGSIKPHTHFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKILD 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_OCHA4 (Elongation factor Tu OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            IR   + D++RG VL KPG++ PHTKF A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAG++ SIIE
Sbjct:  276 IRGVGREDVERGQVLCKPGSVKPHTKFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNVAMDVTLIVPIAMEEKLRFAIREGGRTVGAGIVSSIIE 391          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBL (Elongation factor Tu OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  +K DI+RG VLAKPG+ITPH KF A VYVL K+EGGRH+PF   YRPQFY RTTDVTG V ++ N  +    MVMPGD V + VELI P+A ++G++FAIREGG+T+G+GV+  IIE
Sbjct:  286 LRGTKKEDIERGQVLAKPGSITPHKKFAAEVYVLTKDEGGRHTPFINNYRPQFYFRTTDVTG-VCNLPNGVE----MVMPGDNVSLTVELISPIAMDKGLKFAIREGGRTIGSGVVVDIIE 401          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBJ (Elongation factor Tu OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  +K DI+RG VLAKPG+ITPH KF A VYVL K+EGGRH+PF   YRPQFY RTTDVTG V ++ N  +    MVMPGD V + VELI P+A ++G++FAIREGG+T+G+GV+  IIE
Sbjct:  286 LRGTKKEDIERGQVLAKPGSITPHKKFAAEVYVLTKDEGGRHTPFINNYRPQFYFRTTDVTG-VCNLPNGVE----MVMPGDNVSLTVELISPIAMDKGLKFAIREGGRTIGSGVVVDIIE 401          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VLA P +ITPH KF A VYVL KEEGGRH+PFF+GYRPQFY RTTD+TG ++      +E  +MVMPGD     VELI P+A E G+RFAIREGG+TVGAGV+  I+E
Sbjct:  282 LRGVKRDDVERGQVLAAPKSITPHRKFKAEVYVLSKEEGGRHTPFFSGYRPQFYFRTTDITGVIT-----LEEGVEMVMPGDNATFNVELIAPIAMELGLRFAIREGGRTVGAGVVSEIVE 397          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VLA P +ITPH KF A VYVL KEEGGRH+PFF+GYRPQFY RTTD+TG ++      +E  +MVMPGD     VELI P+A E G+RFAIREGG+TVGAGV+  I+E
Sbjct:  282 LRGVKRDDVERGQVLAAPKSITPHRKFKAEVYVLSKEEGGRHTPFFSGYRPQFYFRTTDITGVIT-----LEEGVEMVMPGDNATFNVELIAPIAMELGLRFAIREGGRTVGAGVVSEIVE 397          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_BLOFL (Elongation factor Tu OS=Blochmannia floridanus GN=tuf PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 69/120 (57.50%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ +++RG VL+KPG I PH+ F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  +E +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  279 LRGTKRDEVERGQVLSKPGCIKPHSNFESEVYILNKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPKEVEMVMPGDNIKMVVHLISPIAMDDGLRFAIREGGRTVGAGVVSRVI 393          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_BART1 (Elongation factor Tu OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++  I+RG VLAKPG++TPHT+F A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAG++  IIE
Sbjct:  276 LRGVDREGIERGQVLAKPGSVTPHTRFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNVAMDVSLIVPIAMEEKLRFAIREGGRTVGAGIVSKIIE 391          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU2_PHOLL (Elongation factor Tu 2 OS=Photorhabdus luminescens subsp. laumondii GN=tuf2 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 71/120 (59.17%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ +I+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD ++M V LI P+A +QG+RFAIREGG+TVGAGV+  +I
Sbjct:  279 LRGTKRDEIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIQMKVTLIAPIAMDQGLRFAIREGGRTVGAGVVAKVI 393          
The following BLAST results are available for this feature:
BLAST of CX288203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RHOP56.798e-3659.50Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_RALEH6.798e-3660.33Elongation factor Tu OS=Ralstonia eutropha (strain... [more]
EFTU_OCHA46.798e-3660.33Elongation factor Tu OS=Ochrobactrum anthropi (str... [more]
EFTU_LEPBL6.798e-3661.16Elongation factor Tu OS=Leptospira borgpetersenii ... [more]
EFTU_LEPBJ6.798e-3661.16Elongation factor Tu OS=Leptospira borgpetersenii ... [more]
EFTU_DESVV6.798e-3660.33Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH6.798e-3660.33Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_BLOFL6.798e-3657.50Elongation factor Tu OS=Blochmannia floridanus GN=... [more]
EFTU_BART16.798e-3659.50Elongation factor Tu OS=Bartonella tribocorum (str... [more]
EFTU2_PHOLL6.798e-3659.17Elongation factor Tu 2 OS=Photorhabdus luminescens... [more]

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Properties
Property NameValue
Genbank descriptionC01017H03SK Veg1 Citrus clementina cDNA clone C01017H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288203 ID=CX288203; Name=CX288203; organism=Citrus clementina; type=EST; length=514bp
CGAATTCGGCACGAGGAAAAGGCTGATATTCAGAGAGGGATGGTGTTGGC
CAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTGGCCATTGTGTATG
TGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTTTGCGGGTTAC
AGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAAGGGTGTCTTC
TATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCTGGCGACC
GTGTCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTGTGAGCAAGGG
ATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAGCTGGTGTTAT
TCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGGGCAGTGGATT
ATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTTAAGTTTTTAT
GGAATTAGTTTCACCATTCTAGGAAAAAAAAACGGCACGAGGCCTCGTGC
CGGGGGGGCCCGGT
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