CX288203

Overview
NameCX288203
Unique NameCX288203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU2_METFK (Elongation factor Tu 2 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +++RG VLAK G+I PHTKF A +YVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +    ++MVMPGD V + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  281 LRGTKREEVERGQVLAKVGSIKPHTKFTAEIYVLGKDEGGRHTPFFNGYRPQFYFRTTDVTGAV-----ELPAGTEMVMPGDNVSISVSLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_PHOLL (Elongation factor Tu 1 OS=Photorhabdus luminescens subsp. laumondii GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 71/120 (59.17%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ +I+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD ++M V LI P+A +QG+RFAIREGG+TVGAGV+  +I
Sbjct:  279 LRGTKRDEIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIQMKVTLIAPIAMDQGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU1_METFK (Elongation factor Tu 1 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ +++RG VLAK G+I PHTKF A +YVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +    ++MVMPGD V + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  281 LRGTKREEVERGQVLAKVGSIKPHTKFTAEIYVLGKDEGGRHTPFFNGYRPQFYFRTTDVTGAV-----ELPAGTEMVMPGDNVSISVSLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_THEMA (Elongation factor Tu OS=Thermotoga maritima GN=tuf PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 8.878e-36
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  +K +++RG VLA PG+I PH +F A +YVLKKEEGGRH+PF  GY+PQFY+RT DVTG +  +     E  +MVMPGD V+M +ELI PVA E+G RFA+REGG+TVGAGV+  +IE
Sbjct:  284 LRGIDKDEVERGQVLAAPGSIKPHKRFKAQIYVLKKEEGGRHTPFTKGYKPQFYIRTADVTGEIVGL----PEGVEMVMPGDHVEMEIELIYPVAIEKGQRFAVREGGRTVGAGVVTEVIE 400          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_SULMW (Elongation factor Tu OS=Sulcia muelleri (strain GWSS) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.878e-36
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  EK DI+RGMV++KPG ITPH KF A +Y+LKKEEGGRH+PF   Y+PQFY+RTTDVTG +  + N      +MVMPGD + + VEL+ PVA  +G+RFAIREGG+TVGAG +  IIE
Sbjct:  280 LRGIEKKDIRRGMVISKPGYITPHKKFNAQIYILKKEEGGRHTPFHNKYKPQFYLRTTDVTGTIYLLNN-----LEMVMPGDNISVEVELLQPVAISEGLRFAIREGGRTVGAGQVIKIIE 395          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_NITWN (Elongation factor Tu OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.878e-36
Identity = 73/121 (60.33%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V          ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  281 LRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPAGTEMVMPGDNVAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_NITHX (Elongation factor Tu OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.878e-36
Identity = 73/121 (60.33%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V          ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  281 LRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPAGTEMVMPGDNVAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_JANMA (Elongation factor Tu OS=Janthinobacterium sp. (strain Marseille) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.878e-36
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VLAKPG+I PH  F   +YVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD V + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  281 LRGTKREDVERGQVLAKPGSIKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVMLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_HERAR (Elongation factor Tu OS=Herminiimonas arsenicoxydans GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.878e-36
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
            +R  ++ D++RG VLAKPG+I PH  F   +YVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD V + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  281 LRGTKREDVERGQVLAKPGSIKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVMLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CX288203 vs. ExPASy Swiss-Prot
Match: EFTU_BUCAT (Elongation factor Tu OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.878e-36
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    4 IRHEEKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 363
            +R  ++ +I+RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A   G+RFAIREGG+TVGAGV+  ++
Sbjct:  279 LRGTKRDEIERGQVLAKPGSIHPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGIEMVMPGDNIKMTVTLINPIAMADGLRFAIREGGRTVGAGVVSKVL 393          
The following BLAST results are available for this feature:
BLAST of CX288203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_METFK6.798e-3660.33Elongation factor Tu 2 OS=Methylobacillus flagella... [more]
EFTU1_PHOLL6.798e-3659.17Elongation factor Tu 1 OS=Photorhabdus luminescens... [more]
EFTU1_METFK6.798e-3660.33Elongation factor Tu 1 OS=Methylobacillus flagella... [more]
EFTU_THEMA8.878e-3658.68Elongation factor Tu OS=Thermotoga maritima GN=tuf... [more]
EFTU_SULMW8.878e-3660.33Elongation factor Tu OS=Sulcia muelleri (strain GW... [more]
EFTU_NITWN8.878e-3660.33Elongation factor Tu OS=Nitrobacter winogradskyi (... [more]
EFTU_NITHX8.878e-3660.33Elongation factor Tu OS=Nitrobacter hamburgensis (... [more]
EFTU_JANMA8.878e-3661.98Elongation factor Tu OS=Janthinobacterium sp. (str... [more]
EFTU_HERAR8.878e-3661.98Elongation factor Tu OS=Herminiimonas arsenicoxyda... [more]
EFTU_BUCAT8.878e-3660.00Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC01017H03SK Veg1 Citrus clementina cDNA clone C01017H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288203 ID=CX288203; Name=CX288203; organism=Citrus clementina; type=EST; length=514bp
CGAATTCGGCACGAGGAAAAGGCTGATATTCAGAGAGGGATGGTGTTGGC
CAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTGGCCATTGTGTATG
TGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTTTGCGGGTTAC
AGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAAGGGTGTCTTC
TATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCTGGCGACC
GTGTCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTGTGAGCAAGGG
ATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAGCTGGTGTTAT
TCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGGGCAGTGGATT
ATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTTAAGTTTTTAT
GGAATTAGTTTCACCATTCTAGGAAAAAAAAACGGCACGAGGCCTCGTGC
CGGGGGGGCCCGGT
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