CX288223

Overview
NameCX288223
Unique NameCX288223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  KGK     ASQE
Sbjct:   87 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSAKGK-----ASQE 129          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKG 150
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GKG
Sbjct:   87 AIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG 124          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK GK    +ASQE
Sbjct:   89 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGK----NASQE 133          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_ASPTN (Histone H2A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hta1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKG 156
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K KG
Sbjct:   88 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKAKG 127          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 153
            AVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   88 AVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK       ASQE
Sbjct:   87 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSGKS----AKASQE 130          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.458e-11
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK G   G   +ASQE
Sbjct:   89 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGTKPGK--NASQE 134          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.458e-11
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 153
            AVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   88 AVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASK 126          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.458e-11
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 153
            AVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   88 AVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.458e-11
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 153
            AVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   88 AVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126          
The following BLAST results are available for this feature:
BLAST of CX288223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
H2A1_DEBHA1.173e-1175.00Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=... [more]
H2A1_CANAL1.173e-1184.21Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=... [more]
H2A_NEUCR3.413e-1175.51Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3[more]
H2A_ASPTN3.413e-1180.00Histone H2A OS=Aspergillus terreus (strain NIH 262... [more]
H2A3_ARATH3.413e-1182.05Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A1_PICST3.413e-1172.92Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A_PODAN4.458e-1172.92Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=... [more]
H2A6_ARATH4.458e-1182.05Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A2_ARATH4.458e-1182.05Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A1_ARATH4.458e-1182.05Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01018B01SK Veg1 Citrus clementina cDNA clone C01018B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288223 ID=CX288223; Name=CX288223; organism=Citrus clementina; type=EST; length=377bp
AATCGGCACGAGGCCTCGTGCCGAATCGGCACGAGGGCAGTTCGAAATGA
TGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTG
TTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGGA
AAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCA
GAATTTTACTAGTATCTGTAAAAAAGGACAAAAAGAAAAATGGTTATGAG
TTTTTTTCTTATGGTAACAGAGATTGCATTTGCTAATCTTTAACTATGTG
TAACTTGATGAGATTATTCCATTGCTTTCCACATGTTATTTGTTATTGAA
CAATAAAAAAAAAAAAAAAAAAAAAAA
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