CX288223

Overview
NameCX288223
Unique NameCX288223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_KLULA (Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180
            A+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K K     ASQE
Sbjct:   87 AIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSSKAK-----ASQE 129          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_GIBZE (Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 147
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK
Sbjct:   89 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 147
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK
Sbjct:   89 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A2_CANAL (Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K     G+ASQE
Sbjct:   87 AIRNDEELNKLLGDVTIAQGGVLPNIHQSLLPAKKAKA----GAASQE 130          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKG-KGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLP+K  KG KG    ASQE
Sbjct:   90 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKSAKGAKG----ASQE 134          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_PHANO (Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 156
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   89 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKPGKG 129          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 159
            A+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   86 AIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_BOTFB (Histone H2A OS=Botryotinia fuckeliana (strain B05.10) GN=hta1 PE=3 SV=4)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K  G    ASQE
Sbjct:   89 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKTAGG-KPASQE 135          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 159
            A+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   86 AIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 159
            A+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   86 AIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
The following BLAST results are available for this feature:
BLAST of CX288223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
H2A_KLULA7.604e-1170.83Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 S... [more]
H2A_GIBZE7.604e-1183.78Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3[more]
H2A_CHAGB7.604e-1183.78Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV... [more]
H2A2_CANAL7.604e-1170.83Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=... [more]
H2A_YARLI9.931e-1173.47Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]
H2A_PHANO9.931e-1180.49Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 ... [more]
H2A_CHLRE9.931e-1175.61Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A_BOTFB9.931e-1172.92Histone H2A OS=Botryotinia fuckeliana (strain B05.... [more]
H2A4_VOLCA9.931e-1175.61Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A3_VOLCA9.931e-1175.61Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01018B01SK Veg1 Citrus clementina cDNA clone C01018B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288223 ID=CX288223; Name=CX288223; organism=Citrus clementina; type=EST; length=377bp
AATCGGCACGAGGCCTCGTGCCGAATCGGCACGAGGGCAGTTCGAAATGA
TGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTG
TTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGGA
AAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCA
GAATTTTACTAGTATCTGTAAAAAAGGACAAAAAGAAAAATGGTTATGAG
TTTTTTTCTTATGGTAACAGAGATTGCATTTGCTAATCTTTAACTATGTG
TAACTTGATGAGATTATTCCATTGCTTTCCACATGTTATTTGTTATTGAA
CAATAAAAAAAAAAAAAAAAAAAAAAA
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