CX288241

Overview
NameCX288241
Unique NameCX288241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 82/215 (38.14%), Postives = 117/215 (54.42%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPE 633
            GFR GKF  LVAT+VAARGLDI +V LII  E P + E ++HRSGRTGRAG  G A+ ++  S++ +V  +E++ G KFE ++ P  +++  S   +    +  V    V  F   A+ L+E  G  A   LA ALA+ +GF+     RSL+   + +VTL L       +   S   V G L  V P    + I  + + AD    GAVFD+ +
Sbjct:  391 GFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA----GKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADK--TGAVFDVKQ 597          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 264
            GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+++  Q R V+ +ER+VG +F  +    VE
Sbjct:  393 GFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.856e-27
Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 237
            GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN  E FVHRSGRTGRAGK+G AI+M +  Q R +R +E DVGCKF
Sbjct:  386 GFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.165e-27
Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 312
            GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGRAGK+G+AIL+    Q R V+ +E++VG +F  +    VE    S  E V A   G
Sbjct:  405 GFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVERGSASMFEGVGARSGG 508          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_GEOKA (DEAD-box ATP-dependent RNA helicase cshA OS=Geobacillus kaustophilus GN=cshA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE-QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 408
            F++G   +LVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK G A+   T  +   +  +ER    K E + PP +++ LE      +   LN V  E++ F+   A+ L+EE  +  + AA  ++
Sbjct:  286 FKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTIVAACLKM 421          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 52/145 (35.86%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435
            F++G   VLVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK+G A+L  T  +   ++++ER    K + +  P +++ LE     +   L N +  E++ ++   A+ ++EE   D++    A L   ++ P +
Sbjct:  286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435
            F++G   VLVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK+G A+L  T  +   ++++ER    K + +  P +++ LE     +   L   +  E++ ++   A+ ++EE   D++    A L   ++ P +
Sbjct:  286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435
            F++G   VLVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK+G A+L  T  +   ++++ER    K + +  P +++ LE     +   L   +  E++ ++   A+ ++EE   D++    A L   ++ P +
Sbjct:  286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435
            F++G   VLVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK+G A+L  T  +   ++++ER    K + +  P +++ LE     +   L   +  E++ ++   A+ ++EE   D++    A L   ++ P +
Sbjct:  286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435
            F++G   VLVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK+G A+L  T  +   ++++ER    K + +  P +++ LE     +   L   +  E++ ++   A+ ++EE   D++    A L   ++ P +
Sbjct:  286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428          
The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH7_ARATH1.421e-2738.14DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
RH53_ARATH1.421e-2765.91DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH9_ORYSJ1.856e-2770.89DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]
RH9_ARATH3.165e-2758.65DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
CSHA_GEOKA8.920e-2238.97DEAD-box ATP-dependent RNA helicase cshA OS=Geobac... [more]
CSHA_BACC11.987e-2135.86DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACHK5.782e-2135.17DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ5.782e-2135.17DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCR5.782e-2135.17DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN5.782e-2135.17DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01018C07SK Veg1 Citrus clementina cDNA clone C01018C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bp
GGCTTTAGGCAAGGAAAATTCACTGTTCTTGTTGCCACTGATGTTGCAGC
GCGTGGGCTTGATATCCCCAATGTTGATTTAATTATCCACTATGAACTTC
CCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGACGTGCA
GGGAAGGAAGGTACTGCCATCCTGATGTTTACGAGTAGCCAAAGGAGAAC
AGTGAGATCCCTTGAGCGTGATGTGGGGTGTAAGTTTGAGTTTGTTAGTC
CCCCAGTTGTAGAAGATGTTTTGGAATCATCCGCTGAGCAAGTAGTTGCC
ACTCTAAATGGAGTTCATCCCGAGTCTGTAGAGTTTTTCACCCCAACCGC
CCAACGATTGATTGAAGAAAAAGGAACAGATGCTCTTGCTGCTGCACTGG
CACAGCTGAGCGGATTTTCACGGCCTCCTTCGTCCCGTTCTCTTATCAAC
CATGAGCAGGGATGGGTGACATTGCAGTTGACTCGCGATTCAGCTTTTTC
TAGGGGATTTATGTCTGCTAGATCTGTCATGGGATTTCTTTCTGACGTTT
ATCCTACAGCTGCCGATGAAATTGGAAAAATACACATAATTGCAGATGAC
AGGGTTCAGGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCAAAGGAGTT
GCTAAATAAACAATACCTCCTGGAAACACCATTTCCAGATCACTAAGTTG
CCTGTCTTGCAGATGATGGGCCCTCAGCGATACTATGGC
back to top