CX288241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27 Identity = 82/215 (38.14%), Postives = 117/215 (54.42%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPE 633 GFR GKF LVAT+VAARGLDI +V LII E P + E ++HRSGRTGRAG G A+ ++ S++ +V +E++ G KFE ++ P +++ S + + V V F A+ L+E G A LA ALA+ +GF+ RSL+ + +VTL L + S V G L V P + I + + AD GAVFD+ + Sbjct: 391 GFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA----GKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADK--TGAVFDVKQ 597
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27 Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 264 GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+++ Q R V+ +ER+VG +F + VE Sbjct: 393 GFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.856e-27 Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 237 GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGRAGK+G AI+M + Q R +R +E DVGCKF Sbjct: 386 GFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.165e-27 Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 312 GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGRAGK+G+AIL+ Q R V+ +E++VG +F + VE S E V A G Sbjct: 405 GFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVERGSASMFEGVGARSGG 508
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_GEOKA (DEAD-box ATP-dependent RNA helicase cshA OS=Geobacillus kaustophilus GN=cshA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22 Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE-QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 408 F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + +ER K E + PP +++ LE + LN V E++ F+ A+ L+EE + + AA ++ Sbjct: 286 FKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTIVAACLKM 421
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21 Identity = 52/145 (35.86%), Postives = 87/145 (60.00%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435 F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++ER K + + P +++ LE + L N + E++ ++ A+ ++EE D++ A L ++ P + Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21 Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435 F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++ER K + + P +++ LE + L + E++ ++ A+ ++EE D++ A L ++ P + Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21 Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435 F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++ER K + + P +++ LE + L + E++ ++ A+ ++EE D++ A L ++ P + Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21 Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435 F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++ER K + + P +++ LE + L + E++ ++ A+ ++EE D++ A L ++ P + Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21 Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435 F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++ER K + + P +++ LE + L + E++ ++ A+ ++EE D++ A L ++ P + Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428 The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bpback to top |