CX288241

Overview
NameCX288241
Unique NameCX288241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435
            F++G   VLVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK+G A+L  T  +   ++++ER    K + +  P +++ LE     +   L   +  E++ ++   A+ ++EE   D++    A L   ++ P +
Sbjct:  286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 411
            F++G   VLVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK G A+   T  ++  +R++E+    K + +  P +++ LE   +  V  L   +   ++ F+   A  L+E+     + AA  +++
Sbjct:  287 FKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKMA 423          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 49/136 (36.03%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQL 408
            F+QG   VLVATDVAARGLDI  V  + ++++P DPE++VHR GRTGRAGK G A+   T  ++  +R++E+    K + +  P +++ +E   +  V  +  +  E ++ F+   A  L+E+  +  + AA  ++
Sbjct:  287 FKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTVVAAAIKM 422          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 276
            F+ GK  +L+ATDVA+RGLDIP VDL+I+Y++P DP  +VHR GRT RAG+ G A+ + T +  + +  +E +VG K E  +  V+ D LE
Sbjct:  348 FKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLE 438          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 327
            F++G++  LVATDVAARG+DI N+ L+I+Y+LP + E++VHR+GRTGRAG +G AI   T+ ++R +  +E  +G + + +  P  E+V     E  +A LN   PES
Sbjct:  286 FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQEEVARKKPE-FLAKLND-RPES 391          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.581e-18
Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD--ALAAALAQLSGFSRP 426
            + G+  +L+ATDVAARGLD+  +  +I+Y++P D E++VHR GRTGRAG+ G A+L   + +RR +R++ER +      V  P VE + +   EQ    +   +    ++ ++    +L      D   LAAAL +++   RP
Sbjct:  291 KNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKQSIPEVQLPKVELLCQRRLEQFAKKVQQQLESRDLDEYSALLDKLYSTDDLDIKTLAAALLKMAQGERP 433          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 411
            + G+  +L+ATDVAARGLD+  +  +I+Y++P D E++VHR GRTGRAG++G A+L   + +RR +R++ER +      V+ P  + +    LE  A++V   L+           P  Q        ++LAAAL +++
Sbjct:  291 KDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDSKDLHEYRGLLPKLQPNNNSLDIESLAAALLKMA 429          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17
Identity = 66/248 (26.61%), Postives = 118/248 (47.58%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD--ALAAALAQLSGFSRP----------PS--------SRSLINHEQG---------WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 660
            + G+  +L+ATDVAARGLD+  +  +I+Y++P D E++VHR GRTGRAG+ G A+L   + +RR +R++ER +      V  P +E + +   E+    +   +    ++ ++    +L      D   LA+AL +++   RP          PS         R   NH               + L R  A     +  R ++G +++     +  IG I + +      A+ +LP+ ++K+LL +
Sbjct:  291 KSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTINQTIPEVQLPKIEVLCKRRLERFAKKVQEQLESRDLDEYSALLDKLYSPDDLDIKTLASALLKMAQGGRPLIIKKDLLQRPSREFSFKDDRRREDNHRNNNRNRRERRELKDIDLYRIEAGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFS----SYAIVELPKGLSKDLLQR 534          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPES----VEFFTPTAQRLIEEKGTDALAAALAQLS 411
            + G+  +L+ATDVAARGLD+  + L+++Y++P D E++VHR GRTGRAG+ G A+L   + +RR +R++ER +      V  P  E +    LE  A +V   L     +     +    PTA+   EE   + LAAAL +++
Sbjct:  292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLETLAAALLKMA 432          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPES----VEFFTPTAQRLIEEKGTDALAAALAQLS 411
            + G+  +L+ATDVAARGLD+  + L+++Y++P D E++VHR GRTGRAG+ G A+L   + +RR +R++ER +      V  P  E +    LE  A +V   L     +     +    PTA+   EE   + LAAAL +++
Sbjct:  292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLETLAAALLKMA 432          
The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CSHA_BACAH5.782e-2135.17DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACSU6.392e-2035.77DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACLD6.392e-2036.03DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
RH36_ARATH1.424e-1948.35DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]
DBPA_BACSU7.068e-1944.44ATP-dependent RNA helicase dbpA OS=Bacillus subtil... [more]
DEAD_BUCAI4.581e-1834.97Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DEAD_BUCBP5.983e-1835.25Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DEAD_BUCAP1.333e-1726.61Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DEAD_SHIFL2.274e-1737.06Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_ECOLI2.274e-1737.06Cold-shock DEAD box protein A OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionC01018C07SK Veg1 Citrus clementina cDNA clone C01018C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bp
GGCTTTAGGCAAGGAAAATTCACTGTTCTTGTTGCCACTGATGTTGCAGC
GCGTGGGCTTGATATCCCCAATGTTGATTTAATTATCCACTATGAACTTC
CCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGACGTGCA
GGGAAGGAAGGTACTGCCATCCTGATGTTTACGAGTAGCCAAAGGAGAAC
AGTGAGATCCCTTGAGCGTGATGTGGGGTGTAAGTTTGAGTTTGTTAGTC
CCCCAGTTGTAGAAGATGTTTTGGAATCATCCGCTGAGCAAGTAGTTGCC
ACTCTAAATGGAGTTCATCCCGAGTCTGTAGAGTTTTTCACCCCAACCGC
CCAACGATTGATTGAAGAAAAAGGAACAGATGCTCTTGCTGCTGCACTGG
CACAGCTGAGCGGATTTTCACGGCCTCCTTCGTCCCGTTCTCTTATCAAC
CATGAGCAGGGATGGGTGACATTGCAGTTGACTCGCGATTCAGCTTTTTC
TAGGGGATTTATGTCTGCTAGATCTGTCATGGGATTTCTTTCTGACGTTT
ATCCTACAGCTGCCGATGAAATTGGAAAAATACACATAATTGCAGATGAC
AGGGTTCAGGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCAAAGGAGTT
GCTAAATAAACAATACCTCCTGGAAACACCATTTCCAGATCACTAAGTTG
CCTGTCTTGCAGATGATGGGCCCTCAGCGATACTATGGC
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