CX288241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21 Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 435 F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++ER K + + P +++ LE + L + E++ ++ A+ ++EE D++ A L ++ P + Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20 Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 411 F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K + + P +++ LE + V L + ++ F+ A L+E+ + AA +++ Sbjct: 287 FKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKMA 423
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20 Identity = 49/136 (36.03%), Postives = 82/136 (60.29%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQL 408 F+QG VLVATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K + + P +++ +E + V + + E ++ F+ A L+E+ + + AA ++ Sbjct: 287 FKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTVVAAAIKM 422
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19 Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 276 F+ GK +L+ATDVA+RGLDIP VDL+I+Y++P DP +VHR GRT RAG+ G A+ + T + + + +E +VG K E + V+ D LE Sbjct: 348 FKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLE 438
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19 Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 327 F++G++ LVATDVAARG+DI N+ L+I+Y+LP + E++VHR+GRTGRAG +G AI T+ ++R + +E +G + + + P E+V E +A LN PES Sbjct: 286 FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQEEVARKKPE-FLAKLND-RPES 391
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.581e-18 Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD--ALAAALAQLSGFSRP 426 + G+ +L+ATDVAARGLD+ + +I+Y++P D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P VE + + EQ + + ++ ++ +L D LAAAL +++ RP Sbjct: 291 KNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKQSIPEVQLPKVELLCQRRLEQFAKKVQQQLESRDLDEYSALLDKLYSTDDLDIKTLAAALLKMAQGERP 433
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18 Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 411 + G+ +L+ATDVAARGLD+ + +I+Y++P D E++VHR GRTGRAG++G A+L + +RR +R++ER + V+ P + + LE A++V L+ P Q ++LAAAL +++ Sbjct: 291 KDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDSKDLHEYRGLLPKLQPNNNSLDIESLAAALLKMA 429
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17 Identity = 66/248 (26.61%), Postives = 118/248 (47.58%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD--ALAAALAQLSGFSRP----------PS--------SRSLINHEQG---------WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 660 + G+ +L+ATDVAARGLD+ + +I+Y++P D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P +E + + E+ + + ++ ++ +L D LA+AL +++ RP PS R NH + L R A + R ++G +++ + IG I + + A+ +LP+ ++K+LL + Sbjct: 291 KSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTINQTIPEVQLPKIEVLCKRRLERFAKKVQEQLESRDLDEYSALLDKLYSPDDLDIKTLASALLKMAQGGRPLIIKKDLLQRPSREFSFKDDRRREDNHRNNNRNRRERRELKDIDLYRIEAGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFS----SYAIVELPKGLSKDLLQR 534
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17 Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPES----VEFFTPTAQRLIEEKGTDALAAALAQLS 411 + G+ +L+ATDVAARGLD+ + L+++Y++P D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P E + LE A +V L + + PTA+ EE + LAAAL +++ Sbjct: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLETLAAALLKMA 432
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17 Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPES----VEFFTPTAQRLIEEKGTDALAAALAQLS 411 + G+ +L+ATDVAARGLD+ + L+++Y++P D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P E + LE A +V L + + PTA+ EE + LAAAL +++ Sbjct: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLETLAAALLKMA 432 The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bpback to top |