CX288241

Overview
NameCX288241
Unique NameCX288241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPES----VEFFTPTAQRLIEEKGTDALAAALAQLS 411
            + G+  +L+ATDVAARGLD+  + L+++Y++P D E++VHR GRTGRAG+ G A+L   + +RR +R++ER +      V  P  E +    LE  A +V   L     +     +    PTA+   EE   + LAAAL +++
Sbjct:  292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLETLAAALLKMA 432          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPES----VEFFTPTAQRLIEEKGTDALAAALAQLS 411
            + G+  +L+ATDVAARGLD+  + L+++Y++P D E++VHR GRTGRAG+ G A+L   + +RR +R++ER +      V  P  E +    LE  A +V   L     +     +    PTA+   EE   + LAAAL +++
Sbjct:  292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLETLAAALLKMA 432          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 48/135 (35.56%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G +   + PP  ++VL++  + +   + N +  ES       +  L+EE  +  L A+L Q
Sbjct:  286 FKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDSNGRRMNALRPPHRKEVLKAREDDIKDKVKNWMSRESEARLKRISSELLEEYDSTELVASLLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_VANPO (ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240
            FR     VL+ATDVAARGLDIP V+L+I+Y++P DP+TF+HRSGRT RAG+ G AI   T      + ++E  +  K +
Sbjct:  300 FRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVTPRDVSRIEAIEERINKKMD 378          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_CANGA (ATP-dependent RNA helicase DBP8 OS=Candida glabrata GN=DBP8 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 234
            FR     VL+ATDVA+RGLDIP V+L+I+Y++P+DP+TF+HRSGRT RAG++G AI   T      + ++E  +  K
Sbjct:  307 FRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFITQRDVSRIEAIEARINMK 383          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2037_STAA3 (Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2037 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DEAD_ECOL62.274e-1737.06Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO572.274e-1737.06Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
Y956_STAHJ8.640e-1735.56Probable DEAD-box ATP-dependent RNA helicase SH095... [more]
DBP8_VANPO8.640e-1750.63ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma... [more]
DBP8_CANGA8.640e-1750.65ATP-dependent RNA helicase DBP8 OS=Candida glabrat... [more]
Y2316_STAA81.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase SAOUH... [more]
Y2168_STAAR1.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase SAR21... [more]
Y2081_STAAM1.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase SAV20... [more]
Y2072_STAAC1.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase SACOL... [more]
Y2037_STAA31.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase SAUSA... [more]

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Properties
Property NameValue
Genbank descriptionC01018C07SK Veg1 Citrus clementina cDNA clone C01018C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bp
GGCTTTAGGCAAGGAAAATTCACTGTTCTTGTTGCCACTGATGTTGCAGC
GCGTGGGCTTGATATCCCCAATGTTGATTTAATTATCCACTATGAACTTC
CCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGACGTGCA
GGGAAGGAAGGTACTGCCATCCTGATGTTTACGAGTAGCCAAAGGAGAAC
AGTGAGATCCCTTGAGCGTGATGTGGGGTGTAAGTTTGAGTTTGTTAGTC
CCCCAGTTGTAGAAGATGTTTTGGAATCATCCGCTGAGCAAGTAGTTGCC
ACTCTAAATGGAGTTCATCCCGAGTCTGTAGAGTTTTTCACCCCAACCGC
CCAACGATTGATTGAAGAAAAAGGAACAGATGCTCTTGCTGCTGCACTGG
CACAGCTGAGCGGATTTTCACGGCCTCCTTCGTCCCGTTCTCTTATCAAC
CATGAGCAGGGATGGGTGACATTGCAGTTGACTCGCGATTCAGCTTTTTC
TAGGGGATTTATGTCTGCTAGATCTGTCATGGGATTTCTTTCTGACGTTT
ATCCTACAGCTGCCGATGAAATTGGAAAAATACACATAATTGCAGATGAC
AGGGTTCAGGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCAAAGGAGTT
GCTAAATAAACAATACCTCCTGGAAACACCATTTCCAGATCACTAAGTTG
CCTGTCTTGCAGATGATGGGCCCTCAGCGATACTATGGC
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