CX288241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17 Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPES----VEFFTPTAQRLIEEKGTDALAAALAQLS 411 + G+ +L+ATDVAARGLD+ + L+++Y++P D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P E + LE A +V L + + PTA+ EE + LAAAL +++ Sbjct: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLETLAAALLKMA 432
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17 Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPES----VEFFTPTAQRLIEEKGTDALAAALAQLS 411 + G+ +L+ATDVAARGLD+ + L+++Y++P D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P E + LE A +V L + + PTA+ EE + LAAAL +++ Sbjct: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLETLAAALLKMA 432
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17 Identity = 48/135 (35.56%), Postives = 76/135 (56.30%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G + + PP ++VL++ + + + N + ES + L+EE + L A+L Q Sbjct: 286 FKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDSNGRRMNALRPPHRKEVLKAREDDIKDKVKNWMSRESEARLKRISSELLEEYDSTELVASLLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_VANPO (ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17 Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240 FR VL+ATDVAARGLDIP V+L+I+Y++P DP+TF+HRSGRT RAG+ G AI T + ++E + K + Sbjct: 300 FRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVTPRDVSRIEAIEERINKKMD 378
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_CANGA (ATP-dependent RNA helicase DBP8 OS=Candida glabrata GN=DBP8 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 234 FR VL+ATDVA+RGLDIP V+L+I+Y++P+DP+TF+HRSGRT RAG++G AI T + ++E + K Sbjct: 307 FRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFITQRDVSRIEAIEARINMK 383
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2037_STAA3 (Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2037 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420 The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bpback to top |