CX288241

Overview
NameCX288241
Unique NameCX288241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E   G K   + PP  ++VL++  + +   + N +  ES       +  L+ E     L AAL Q
Sbjct:  286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 408
            + G+  +L+ATDVAARGLD+  + L+++Y++P D E++VHR GRTGRAG+ G A+L   + +RR +R++ER +      V  P  E + +   E+               F    Q+ +E    D   A LA++
Sbjct:  292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLSKRRLEK---------------FAAKVQQQLESSDLDQYRALLAKI 410          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 234
            FR G   +LVATDVAARGLDIP+VD++++Y+LP D +T++HR GRT RAGK G AI + T         +E  +G K
Sbjct:  346 FRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKK 422          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV-LESSAEQVVATLNGVHPESVEFFTPTAQRLIEE 369
            R G   +LVATDVAARGLD+  +  +++Y++P+D E++VHR GRTGRAG+ G A++  +  +   ++++E+           P VEDV  +  A+   +  N +    +E F    +RL+EE
Sbjct:  297 RDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELF----RRLVEE 414          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF-EFVSPPVVEDVLES 279
            F+ GK  +L+ATDVAARGLDIP+VD++I+Y++P D + ++HR GRT RAGK G +I + T         +E  +G K  +  SPP   DVL +
Sbjct:  349 FKSGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLGFKLPKDPSPP--RDVLNA 439          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 282
            F+ G   +L+ATDVA+RGLDIP+V+L++++++P DP+ F+HR GRT RAG+ G A+ +        + S+E  +  K E +     + V+  S
Sbjct:  299 FKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDIDRIASIEERINKKMELLEEVTDDSVITDS 391          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 37/93 (39.78%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 282
            F+ G   +L+ATDVA+RGLDIP V+L+I++++P DP+ F+HR GRT RAG++G A+ +        ++S+E  +  K E +     ++V++ S
Sbjct:  299 FKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKES 391          
The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y2004_STAAW1.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase MW200... [more]
Y1985_STAAS1.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase SAS19... [more]
Y1965_STAAB1.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase SAB19... [more]
Y1885_STAAN1.128e-1636.30Probable DEAD-box ATP-dependent RNA helicase SA188... [more]
DEAD_KLEPN1.128e-1634.33Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]
RRP3_GIBZE9.552e-1651.95ATP-dependent rRNA helicase RRP3 OS=Gibberella zea... [more]
DEAD_MYCTU9.552e-1636.07Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
RRP3_PICGU1.248e-1546.24ATP-dependent rRNA helicase RRP3 OS=Pichia guillie... [more]
DBP8_PICST1.248e-1538.71ATP-dependent RNA helicase DBP8 OS=Pichia stipitis... [more]
DBP8_CANAL1.248e-1539.78ATP-dependent RNA helicase DBP8 OS=Candida albican... [more]

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Properties
Property NameValue
Genbank descriptionC01018C07SK Veg1 Citrus clementina cDNA clone C01018C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bp
GGCTTTAGGCAAGGAAAATTCACTGTTCTTGTTGCCACTGATGTTGCAGC
GCGTGGGCTTGATATCCCCAATGTTGATTTAATTATCCACTATGAACTTC
CCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGACGTGCA
GGGAAGGAAGGTACTGCCATCCTGATGTTTACGAGTAGCCAAAGGAGAAC
AGTGAGATCCCTTGAGCGTGATGTGGGGTGTAAGTTTGAGTTTGTTAGTC
CCCCAGTTGTAGAAGATGTTTTGGAATCATCCGCTGAGCAAGTAGTTGCC
ACTCTAAATGGAGTTCATCCCGAGTCTGTAGAGTTTTTCACCCCAACCGC
CCAACGATTGATTGAAGAAAAAGGAACAGATGCTCTTGCTGCTGCACTGG
CACAGCTGAGCGGATTTTCACGGCCTCCTTCGTCCCGTTCTCTTATCAAC
CATGAGCAGGGATGGGTGACATTGCAGTTGACTCGCGATTCAGCTTTTTC
TAGGGGATTTATGTCTGCTAGATCTGTCATGGGATTTCTTTCTGACGTTT
ATCCTACAGCTGCCGATGAAATTGGAAAAATACACATAATTGCAGATGAC
AGGGTTCAGGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCAAAGGAGTT
GCTAAATAAACAATACCTCCTGGAAACACCATTTCCAGATCACTAAGTTG
CCTGTCTTGCAGATGATGGGCCCTCAGCGATACTATGGC
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