CX288241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N + ES + L+ E L AAL Q Sbjct: 286 FKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 408 + G+ +L+ATDVAARGLD+ + L+++Y++P D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P E + + E+ F Q+ +E D A LA++ Sbjct: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLSKRRLEK---------------FAAKVQQQLESSDLDQYRALLAKI 410
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16 Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 234 FR G +LVATDVAARGLDIP+VD++++Y+LP D +T++HR GRT RAGK G AI + T +E +G K Sbjct: 346 FRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKK 422
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16 Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV-LESSAEQVVATLNGVHPESVEFFTPTAQRLIEE 369 R G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G A++ + + ++++E+ P VEDV + A+ + N + +E F +RL+EE Sbjct: 297 RDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELF----RRLVEE 414
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15 Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF-EFVSPPVVEDVLES 279 F+ GK +L+ATDVAARGLDIP+VD++I+Y++P D + ++HR GRT RAGK G +I + T +E +G K + SPP DVL + Sbjct: 349 FKSGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLGFKLPKDPSPP--RDVLNA 439
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15 Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 282 F+ G +L+ATDVA+RGLDIP+V+L++++++P DP+ F+HR GRT RAG+ G A+ + + S+E + K E + + V+ S Sbjct: 299 FKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDIDRIASIEERINKKMELLEEVTDDSVITDS 391
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15 Identity = 37/93 (39.78%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 282 F+ G +L+ATDVA+RGLDIP V+L+I++++P DP+ F+HR GRT RAG++G A+ + ++S+E + K E + ++V++ S Sbjct: 299 FKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKES 391 The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bpback to top |