CX288241

Overview
NameCX288241
Unique NameCX288241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240
            FR G   +LVATDVAARGLDIPNVD +I+++LP D +T+VHR GRT RAGK G AI + T         +E  +G K +
Sbjct:  376 FRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALGHKLD 454          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 267
            FR G   +LVATDVAARGLDIP+VD++++Y++P D +T++HR GRT RAGK G AI + T         +E  +G K   V  P V+D
Sbjct:  346 FRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAALGKK--QVEYPTVKD 431          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 291
            F+ G   +L+ATDVA+RGLDIP V+L++++++P DP+ F+HR GRT RAG++G AI +        + S+E  +  K E +     + V+  S ++
Sbjct:  302 FKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGEKDIERIESIEERINKKMELLEGVDDDKVINDSLQK 397          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_KLULA (ATP-dependent RNA helicase DBP8 OS=Kluyveromyces lactis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 300
            FR     VL+ATDVA+RGLDIP V+L+++Y++P +P+TF+HR+GRT RAG+ G ++   T    + V ++E  +  K E  +      V+  S  +V A
Sbjct:  302 FRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTA 400          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF--EFVSPPVV---EDVLESSAEQVVATLN 309
            F+ GK ++LVATDVAARGLDIP+VDL+I+Y++P D ++++HR GRT RAG+ G ++ + +      +  +E  +G K   E V   +V    D ++ +  +V+  LN
Sbjct:  353 FKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRIEEVLGKKLPKENVDKSIVLSLRDSVDKANGEVIMELN 459          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 384
            F+ G   VLVATDVAARGLDI  V  + +Y++P DPE++VHR GRTGRAGK G +I     ++   ++ +E     + + + P  VE+  +S  +  +  +        +F   T +   E+ G DA
Sbjct:  285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPASVEESFQSKKQVALKKIER------DFADETIRANFEKFGKDA 405          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 384
            F+ G   VLVATDVAARGLDI  V  + +Y++P DPE++VHR GRTGRAGK G +I     ++   ++ +E     + + + P  VE+  +S  +  +  +        +F   T +   E+ G DA
Sbjct:  285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPASVEESFQSKKQVALKKIER------DFADETIRANFEKFGKDA 405          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 213
            FR G++ +LVAT VAARGLDIPNV  +I+Y+LP D + +VHR GRTGRAG  G A   F    R  VR L
Sbjct:  492 FRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 561          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_PICGU (ATP-dependent RNA helicase DBP8 OS=Pichia guilliermondii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 300
            FR G   VL+ATDVA+RGLDIPNV+L+++ ++P DP+ ++HR GRT RAGK+G ++ + +      + ++E  +  K + +     + +++ S   V A
Sbjct:  299 FRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERILAIENHINKKMDLLEEVNDDKIIKESLSIVTA 397          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 213
            FRQGK  ++VATDVA+RG+D+  ++ +I+Y+ P++ E +VHR GRTGRAG +GTA   FT   R+  R L
Sbjct:  409 FRQGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDL 478          
The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_NEUCR1.629e-1553.16ATP-dependent rRNA helicase rrp-3 OS=Neurospora cr... [more]
RRP3_BOTFB1.629e-1548.86ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
DBP8_LODEL1.629e-1538.54ATP-dependent RNA helicase DBP8 OS=Lodderomyces el... [more]
DBP8_KLULA1.629e-1540.40ATP-dependent RNA helicase DBP8 OS=Kluyveromyces l... [more]
RRP3_ASHGO2.128e-1540.19ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypi... [more]
EXP9_STRR62.128e-1536.22Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
EXP9_STRPN2.128e-1536.22Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
DED1_EMENI2.128e-1557.14ATP-dependent RNA helicase ded1 OS=Emericella nidu... [more]
DBP8_PICGU2.128e-1537.37ATP-dependent RNA helicase DBP8 OS=Pichia guillier... [more]
DBP2_YARLI2.128e-1551.43ATP-dependent RNA helicase DBP2 OS=Yarrowia lipoly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01018C07SK Veg1 Citrus clementina cDNA clone C01018C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bp
GGCTTTAGGCAAGGAAAATTCACTGTTCTTGTTGCCACTGATGTTGCAGC
GCGTGGGCTTGATATCCCCAATGTTGATTTAATTATCCACTATGAACTTC
CCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGACGTGCA
GGGAAGGAAGGTACTGCCATCCTGATGTTTACGAGTAGCCAAAGGAGAAC
AGTGAGATCCCTTGAGCGTGATGTGGGGTGTAAGTTTGAGTTTGTTAGTC
CCCCAGTTGTAGAAGATGTTTTGGAATCATCCGCTGAGCAAGTAGTTGCC
ACTCTAAATGGAGTTCATCCCGAGTCTGTAGAGTTTTTCACCCCAACCGC
CCAACGATTGATTGAAGAAAAAGGAACAGATGCTCTTGCTGCTGCACTGG
CACAGCTGAGCGGATTTTCACGGCCTCCTTCGTCCCGTTCTCTTATCAAC
CATGAGCAGGGATGGGTGACATTGCAGTTGACTCGCGATTCAGCTTTTTC
TAGGGGATTTATGTCTGCTAGATCTGTCATGGGATTTCTTTCTGACGTTT
ATCCTACAGCTGCCGATGAAATTGGAAAAATACACATAATTGCAGATGAC
AGGGTTCAGGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCAAAGGAGTT
GCTAAATAAACAATACCTCCTGGAAACACCATTTCCAGATCACTAAGTTG
CCTGTCTTGCAGATGATGGGCCCTCAGCGATACTATGGC
back to top