CX288241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15 Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240 FR G +LVATDVAARGLDIPNVD +I+++LP D +T+VHR GRT RAGK G AI + T +E +G K + Sbjct: 376 FRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALGHKLD 454
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15 Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 267 FR G +LVATDVAARGLDIP+VD++++Y++P D +T++HR GRT RAGK G AI + T +E +G K V P V+D Sbjct: 346 FRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAALGKK--QVEYPTVKD 431
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15 Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 291 F+ G +L+ATDVA+RGLDIP V+L++++++P DP+ F+HR GRT RAG++G AI + + S+E + K E + + V+ S ++ Sbjct: 302 FKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGEKDIERIESIEERINKKMELLEGVDDDKVINDSLQK 397
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_KLULA (ATP-dependent RNA helicase DBP8 OS=Kluyveromyces lactis GN=DBP8 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15 Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 300 FR VL+ATDVA+RGLDIP V+L+++Y++P +P+TF+HR+GRT RAG+ G ++ T + V ++E + K E + V+ S +V A Sbjct: 302 FRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTA 400
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15 Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF--EFVSPPVV---EDVLESSAEQVVATLN 309 F+ GK ++LVATDVAARGLDIP+VDL+I+Y++P D ++++HR GRT RAG+ G ++ + + + +E +G K E V +V D ++ + +V+ LN Sbjct: 353 FKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRIEEVLGKKLPKENVDKSIVLSLRDSVDKANGEVIMELN 459
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15 Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 384 F+ G VLVATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G +I ++ ++ +E + + + P VE+ +S + + + +F T + E+ G DA Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPASVEESFQSKKQVALKKIER------DFADETIRANFEKFGKDA 405
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15 Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 384 F+ G VLVATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G +I ++ ++ +E + + + P VE+ +S + + + +F T + E+ G DA Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPASVEESFQSKKQVALKKIER------DFADETIRANFEKFGKDA 405
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15 Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 213 FR G++ +LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR L Sbjct: 492 FRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 561
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_PICGU (ATP-dependent RNA helicase DBP8 OS=Pichia guilliermondii GN=DBP8 PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15 Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 300 FR G VL+ATDVA+RGLDIPNV+L+++ ++P DP+ ++HR GRT RAGK+G ++ + + + ++E + K + + + +++ S V A Sbjct: 299 FRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERILAIENHINKKMDLLEEVNDDKIIKESLSIVTA 397
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15 Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 213 FRQGK ++VATDVA+RG+D+ ++ +I+Y+ P++ E +VHR GRTGRAG +GTA FT R+ R L Sbjct: 409 FRQGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDL 478 The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bpback to top |