CX288241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15 Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 264 F+ GK ++VATDVA+RG+D+ N+ +++Y+ PN+ E ++HR GRTGRAG GTAI +FT+ ++ R L + + + P +VE Sbjct: 427 FKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDLVNVLQEAKQQIDPRLVE 513
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15 Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E + + + PP ++VL++ + + + N + E+ + L++E + L A+L Q Sbjct: 286 FKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1679_STAES (Probable DEAD-box ATP-dependent RNA helicase SE_1679 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1679 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15 Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405 F+ + +LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R +E + + + PP ++VL++ + + + N + E+ + L++E + L A+L Q Sbjct: 286 FKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240 FR G +LVATDVAARGLDIP+VD++++Y++P D +T++HR GRT RAGK G AI T +E +G K E Sbjct: 342 FRAGSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMRIEAALGKKQE 420
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15 Identity = 42/107 (39.25%), Postives = 69/107 (64.49%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF--EFVSPPVV---EDVLESSAEQVVATLN 309 F+ GK ++LVATDVAARGLDIP+VD++I+Y++P D ++++HR GRT RAG+ G +I + + + +E +G K E V ++ D ++ + +VV +N Sbjct: 359 FKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMN 465
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15 Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 216 R G ++VATDVAARG+DI + L+++Y++P D E++VHR GRTGRAG+ G A+L +RR +R++E Sbjct: 291 RNGSLDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE 360
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240 FR +LVATDVAARGLDIP V L+I+Y++P DP+ ++HR GRT RAG++G A+ + ++++E VG + E Sbjct: 417 FRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVQLIQAIENRVGRQME 495
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15 Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 273 FR G+ +LVAT VAARGLDIPNV +I+Y+LP+D + +VHR GRTGRAG G A F V+ L + + + PP +ED L Sbjct: 448 FRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVKGLYEILEEANQEI-PPFLEDCL 536
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_SCLS1 (ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240 FR +LVATDVAARGLDIP V L+I+Y++P DP+ ++HR GRT RAG++G A+ + + ++E+ VG + E Sbjct: 412 FRASAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKGEAVTFVGQRDVQLILAIEKRVGRQME 490
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15 Identity = 43/114 (37.72%), Postives = 72/114 (63.16%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF--EFVSPPVV---EDVLESSAEQVVATLNGVHPESV 330 F+ G+ ++LVATDVAARGLDIP+VD++I+Y++P D ++++HR GRT RAG+ G +I + + + +E +G K E V+ + D ++ + +VV LN + E + Sbjct: 372 FKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVNKDAILTLRDSVDKANGEVVMELNRRNKEKI 485 The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bpback to top |