CX288241

Overview
NameCX288241
Unique NameCX288241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 264
            F+ GK  ++VATDVA+RG+D+ N+  +++Y+ PN+ E ++HR GRTGRAG  GTAI +FT+  ++  R L   +    + + P +VE
Sbjct:  427 FKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDLVNVLQEAKQQIDPRLVE 513          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E     + + + PP  ++VL++  + +   + N +  E+       +  L++E  +  L A+L Q
Sbjct:  286 FKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: Y1679_STAES (Probable DEAD-box ATP-dependent RNA helicase SE_1679 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1679 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 405
            F+  +  +LVATDVAARGLDI  V  + ++++P D E++ HR GRTGRAGKEG A+      +   +R +E     + + + PP  ++VL++  + +   + N +  E+       +  L++E  +  L A+L Q
Sbjct:  286 FKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240
            FR G   +LVATDVAARGLDIP+VD++++Y++P D +T++HR GRT RAGK G AI   T         +E  +G K E
Sbjct:  342 FRAGSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMRIEAALGKKQE 420          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 42/107 (39.25%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF--EFVSPPVV---EDVLESSAEQVVATLN 309
            F+ GK ++LVATDVAARGLDIP+VD++I+Y++P D ++++HR GRT RAG+ G +I + +      +  +E  +G K   E V   ++    D ++ +  +VV  +N
Sbjct:  359 FKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMN 465          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    7 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 216
            R G   ++VATDVAARG+DI  + L+++Y++P D E++VHR GRTGRAG+ G A+L     +RR +R++E
Sbjct:  291 RNGSLDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE 360          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240
            FR     +LVATDVAARGLDIP V L+I+Y++P DP+ ++HR GRT RAG++G A+        + ++++E  VG + E
Sbjct:  417 FRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVQLIQAIENRVGRQME 495          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 273
            FR G+  +LVAT VAARGLDIPNV  +I+Y+LP+D + +VHR GRTGRAG  G A   F       V+ L   +    + + PP +ED L
Sbjct:  448 FRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVKGLYEILEEANQEI-PPFLEDCL 536          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DBP8_SCLS1 (ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 240
            FR     +LVATDVAARGLDIP V L+I+Y++P DP+ ++HR GRT RAG++G A+        + + ++E+ VG + E
Sbjct:  412 FRASAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKGEAVTFVGQRDVQLILAIEKRVGRQME 490          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 43/114 (37.72%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF--EFVSPPVV---EDVLESSAEQVVATLNGVHPESV 330
            F+ G+ ++LVATDVAARGLDIP+VD++I+Y++P D ++++HR GRT RAG+ G +I + +      +  +E  +G K   E V+   +    D ++ +  +VV  LN  + E +
Sbjct:  372 FKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVNKDAILTLRDSVDKANGEVVMELNRRNKEKI 485          
The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_GIBZE3.630e-1542.53ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
Y1688_STAEQ4.741e-1533.33Probable DEAD-box ATP-dependent RNA helicase SERP1... [more]
Y1679_STAES4.741e-1533.33Probable DEAD-box ATP-dependent RNA helicase SE_16... [more]
RRP3_SCLS14.741e-1550.63ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sc... [more]
RRP3_CANGA4.741e-1539.25ATP-dependent rRNA helicase RRP3 OS=Candida glabra... [more]
DEAD_HAEIN4.741e-1550.00Cold-shock DEAD box protein A homolog OS=Haemophil... [more]
DBP8_BOTFB4.741e-1546.84ATP-dependent RNA helicase dbp8 OS=Botryotinia fuc... [more]
DED1_CANGA6.192e-1547.78ATP-dependent RNA helicase DED1 OS=Candida glabrat... [more]
DBP8_SCLS16.192e-1546.84ATP-dependent RNA helicase dbp8 OS=Sclerotinia scl... [more]
RRP3_VANPO8.087e-1537.72ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozym... [more]

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Properties
Property NameValue
Genbank descriptionC01018C07SK Veg1 Citrus clementina cDNA clone C01018C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bp
GGCTTTAGGCAAGGAAAATTCACTGTTCTTGTTGCCACTGATGTTGCAGC
GCGTGGGCTTGATATCCCCAATGTTGATTTAATTATCCACTATGAACTTC
CCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGACGTGCA
GGGAAGGAAGGTACTGCCATCCTGATGTTTACGAGTAGCCAAAGGAGAAC
AGTGAGATCCCTTGAGCGTGATGTGGGGTGTAAGTTTGAGTTTGTTAGTC
CCCCAGTTGTAGAAGATGTTTTGGAATCATCCGCTGAGCAAGTAGTTGCC
ACTCTAAATGGAGTTCATCCCGAGTCTGTAGAGTTTTTCACCCCAACCGC
CCAACGATTGATTGAAGAAAAAGGAACAGATGCTCTTGCTGCTGCACTGG
CACAGCTGAGCGGATTTTCACGGCCTCCTTCGTCCCGTTCTCTTATCAAC
CATGAGCAGGGATGGGTGACATTGCAGTTGACTCGCGATTCAGCTTTTTC
TAGGGGATTTATGTCTGCTAGATCTGTCATGGGATTTCTTTCTGACGTTT
ATCCTACAGCTGCCGATGAAATTGGAAAAATACACATAATTGCAGATGAC
AGGGTTCAGGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCAAAGGAGTT
GCTAAATAAACAATACCTCCTGGAAACACCATTTCCAGATCACTAAGTTG
CCTGTCTTGCAGATGATGGGCCCTCAGCGATACTATGGC
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