CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_METPB (Alanyl-tRNA synthetase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=alaS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVED 257
            HV QKGS+V PE+LRFD SH KP+D   L R+E I N  +     V +K   + EA   +G RA+FGE Y D VRVV++GR V+D
Sbjct:  581 HVAQKGSLVAPERLRFDISHPKPIDEAELTRVEEIANAVLLQNAPVVTKLMAVDEAIE-SGARALFGEKYGDEVRVVSMGRPVDD 664          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_METEP (Alanyl-tRNA synthetase OS=Methylobacterium extorquens (strain PA1) GN=alaS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVED 257
            HV QKGS+V PE+LRFD SH KP+D   L R+E I N  +     V +K   + EA   +G RA+FGE Y D VRVV++GR V+D
Sbjct:  581 HVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEAIE-SGARALFGEKYGDEVRVVSMGRPVDD 664          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_HAHCH (Alanyl-tRNA synthetase OS=Hahella chejuensis (strain KCTC 2396) GN=alaS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDF+H +P+  E +R++ESIVN QI+A   V S E    +A R  G  A+FGE Y D VRV+A+G
Sbjct:  579 HVAQKGSLVDPERLRFDFAHFEPMTQEQIRQVESIVNAQIRANTSV-STEVMGMDAARERGAMALFGEKYGDTVRVLAMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_RHOP2 (Alanyl-tRNA synthetase OS=Rhodopseudomonas palustris (strain HaA2) GN=alaS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVED 257
            H+ QKGS+V P++LRFDF H KP+ P+ LRR+E I N+ I  E D  +      +  R  G RA+FGE Y D VRVV++G+   D
Sbjct:  581 HIAQKGSMVAPDRLRFDFVHQKPITPDELRRVEDIAND-IVLENDEVTTRLMAVDDAREAGARALFGEKYGDEVRVVSMGKTARD 664          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_GEOSL (Alanyl-tRNA synthetase OS=Geobacter sulfurreducens GN=alaS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV Q GS+V P++LRFDF+H   + PE +RR+E IVN  I A  DV ++E  L EA  I G  A+FGE Y D VRVV +G
Sbjct:  584 HVKQSGSLVGPDRLRFDFTHFAAMTPEEIRRVEEIVNSCIMANDDVHAREMALDEAMEI-GATALFGEKYGDTVRVVRVG 662          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LISW6 (Alanyl-tRNA synthetase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=alaS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGR 245
            HV+Q GS+V P++LRFDFSH   +  E L ++E IVNE+I  +++V  +E  +AEAK + G  A+FGE Y D VRVV +G+
Sbjct:  583 HVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKEL-GAMALFGEKYGDVVRVVQVGK 662          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LISMF (Alanyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=alaS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGR 245
            HV+Q GS+V P++LRFDFSH   +  E L ++E IVNE+I  +++V  +E  +AEAK + G  A+FGE Y D VRVV +G+
Sbjct:  583 HVNQAGSLVSPDRLRFDFSHFGQITEEELTKLEEIVNEKIWEQINVVIEEMPIAEAKEL-GAMALFGEKYGDIVRVVQVGK 662          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_DEHSC (Alanyl-tRNA synthetase OS=Dehalococcoides sp. (strain CBDB1) GN=alaS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    6 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGR 245
            V Q+GSVV P++LRFDFSH KP+  + +RR+E  VN++I+  L V+++E     A    G+ A+FGE Y D VRV+ +GR
Sbjct:  579 VQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMPYRHALE-EGVTALFGEKYGDRVRVLRVGR 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_DEHSB (Alanyl-tRNA synthetase OS=Dehalococcoides sp. (strain BAV1) GN=alaS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    6 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGR 245
            V Q+GSVV P++LRFDFSH KP+  + +RR+E  VN++I+  L V+++E     A    G+ A+FGE Y D VRV+ +GR
Sbjct:  579 VQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMPYRHALE-EGVTALFGEKYGDRVRVLRVGR 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BRASB (Alanyl-tRNA synthetase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=alaS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAE 305
            H+ Q+GS+V P++LRFDF+H KP+  E L R+E I N+ +    +V ++   L +A+   G RA+FGE Y D VRVV++G    D  ++ +    +  S E
Sbjct:  581 HIAQRGSLVSPDRLRFDFAHPKPISAEELARVEDIANDVVLENAEVTTRLMALDDAREA-GARALFGEKYGDEVRVVSMGNAARDQASNAQASNAMGWSVE 680          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_METPB6.952e-1550.59Alanyl-tRNA synthetase OS=Methylobacterium populi ... [more]
SYA_METEP6.952e-1550.59Alanyl-tRNA synthetase OS=Methylobacterium extorqu... [more]
SYA_HAHCH9.079e-1553.75Alanyl-tRNA synthetase OS=Hahella chejuensis (stra... [more]
SYA_RHOP22.023e-1447.06Alanyl-tRNA synthetase OS=Rhodopseudomonas palustr... [more]
SYA_GEOSL3.450e-1452.50Alanyl-tRNA synthetase OS=Geobacter sulfurreducens... [more]
SYA_LISW64.506e-1449.38Alanyl-tRNA synthetase OS=Listeria welshimeri sero... [more]
SYA_LISMF4.506e-1449.38Alanyl-tRNA synthetase OS=Listeria monocytogenes s... [more]
SYA_DEHSC4.506e-1447.50Alanyl-tRNA synthetase OS=Dehalococcoides sp. (str... [more]
SYA_DEHSB4.506e-1447.50Alanyl-tRNA synthetase OS=Dehalococcoides sp. (str... [more]
SYA_BRASB4.506e-1438.61Alanyl-tRNA synthetase OS=Bradyrhizobium sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
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