CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_THELT (Alanyl-tRNA synthetase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=alaS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDL 260
            HV Q GS+V PEKLRFDF+H KP+    L  IE++VNE I   + V ++E +  EA    G  A+FGE Y D VRVV +    E+L
Sbjct:  567 HVKQAGSLVTPEKLRFDFTHHKPLTDNELMSIENMVNEIILRSIPVITEEKSYKEAV-AEGAIALFGEKYGDVVRVVKVHSFSEEL 651          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PSEPK (Alanyl-tRNA synthetase OS=Pseudomonas putida (strain KT2440) GN=alaS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  ++LRFDFSH + V PE ++++E IVN +I+    V   E T  E  +  G  A+FGE Y D VRV+++G
Sbjct:  579 HVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPV-ETELTDIETAKAKGAMALFGEKYGDTVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PSEP1 (Alanyl-tRNA synthetase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=alaS PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  ++LRFDFSH + V PE ++++E IVN +I+    V   E T  E  +  G  A+FGE Y D VRV+++G
Sbjct:  579 HVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPV-ETELTDIETAKAKGAMALFGEKYGDTVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PSEE4 (Alanyl-tRNA synthetase OS=Pseudomonas entomophila (strain L48) GN=alaS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  ++LRFDFSH + V PE ++ +E IVN +++   +V   E T  E  +  G  A+FGE Y D VRV+++G
Sbjct:  579 HVQQKGSLVDSQRLRFDFSHFEAVKPEQIKALEDIVNREVRRNTEV-QTELTDIETAKAKGAMALFGEKYGDTVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LEGPA (Alanyl-tRNA synthetase OS=Legionella pneumophila (strain Paris) GN=alaS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV Q+GS+V  E+ RFDFSH + ++P+ +++IE +VN QI+A  +V ++   +  AK+ +G  A+FGE Y D VRV+++G
Sbjct:  570 HVQQRGSLVDAERARFDFSHFEALNPQQIQQIEEVVNAQIRANNEVITQVMDIESAKQ-SGAVALFGEKYSDAVRVLSMG 648          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_GEOUR (Alanyl-tRNA synthetase OS=Geobacter uraniireducens (strain Rf4) GN=alaS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDL 260
            HV Q GS+V  E+LRFDF+H   +  E LRR+E+IVN  +    DV S E    EA + +G  A+FGE Y D VRVV +G    +L
Sbjct:  585 HVKQAGSLVTAERLRFDFTHFSAMTVEELRRVENIVNTYVMDNADVKSLEMAATEAMQ-SGATALFGEKYGDRVRVVKVGEVSSEL 669          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_ERWCT (Alanyl-tRNA synthetase OS=Erwinia carotovora subsp. atroseptica GN=alaS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V    LRFDFSH + + PE +R++E IVN QI+  L V +    L +A R  G  A+FGE Y D VRV+++G
Sbjct:  581 HVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTDVMALDDA-RAKGAMALFGEKYDDHVRVLSMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_CAUCR (Alanyl-tRNA synthetase OS=Caulobacter crescentus GN=alaS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVED 257
            HV QKG +V  E++RFDFSHG P+  E L RIE+ VNE I+  +   +KE    EA    G  A+FGE Y D VRV+ +G+ + D
Sbjct:  580 HVAQKGQMVDGERMRFDFSHGGPLTAEELDRIEAEVNEVIRQNVPAETKEMAPQEAIEA-GAVALFGEKYGDSVRVLTLGKSLAD 663          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SYMTH (Alanyl-tRNA synthetase OS=Symbiobacterium thermophilum GN=alaS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV Q GS+V P++LRFDF+H  P+ PE +  +E ++N +I+A   V   E  L EA+ + G  A+FGE Y + VRVV++G
Sbjct:  588 HVQQAGSLVAPDRLRFDFTHTGPMTPEQIAAVEEMINAEIEAAEPVTWTEMPLDEARAL-GAMALFGEKYGEIVRVVSVG 666          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHESH (Alanyl-tRNA synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=alaS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  E+LRFDFSH + V PE L+ +E +VN QI+    + ++   + +AK   G  A+FGE Y D VRVV +G
Sbjct:  579 HVTQKGSLVDSERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSAEVMDMDQAKE-KGAMALFGEKYTDEVRVVTMG 657          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_THELT4.217e-1247.67Alanyl-tRNA synthetase OS=Thermotoga lettingae (st... [more]
SYA_PSEPK4.217e-1246.25Alanyl-tRNA synthetase OS=Pseudomonas putida (stra... [more]
SYA_PSEP14.217e-1246.25Alanyl-tRNA synthetase OS=Pseudomonas putida (stra... [more]
SYA_PSEE44.217e-1245.00Alanyl-tRNA synthetase OS=Pseudomonas entomophila ... [more]
SYA_LEGPA4.217e-1243.75Alanyl-tRNA synthetase OS=Legionella pneumophila (... [more]
SYA_GEOUR4.217e-1246.51Alanyl-tRNA synthetase OS=Geobacter uraniireducens... [more]
SYA_ERWCT4.217e-1248.75Alanyl-tRNA synthetase OS=Erwinia carotovora subsp... [more]
SYA_CAUCR4.217e-1247.06Alanyl-tRNA synthetase OS=Caulobacter crescentus G... [more]
SYA_SYMTH5.508e-1245.00Alanyl-tRNA synthetase OS=Symbiobacterium thermoph... [more]
SYA_SHESH5.508e-1247.50Alanyl-tRNA synthetase OS=Shewanella sediminis (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
back to top