CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PSEPF (Alanyl-tRNA synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=alaS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  ++LRFDFSH + + PE ++ +E IVN +I+    V ++E  +  AK+  G  A+FGE Y D VRV+++G
Sbjct:  579 HVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVETEETDIETAKQ-KGAMALFGEKYGDNVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_OCHA4 (Alanyl-tRNA synthetase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=alaS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V P++LRFDFSH KP+  E L ++E++ NE I     V ++   + +A    G  A+FGE Y D VRVV++G
Sbjct:  581 HVAQKGSLVAPDRLRFDFSHPKPISAEELTQVENLANEIILQNAPVSTRLMAVDDA-IAEGAMALFGEKYGDEVRVVSMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LEGPH (Alanyl-tRNA synthetase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=alaS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV Q+GS+V  E+ RFDFSH + + P+ +++IE +VN QI+A  +V ++   +  AK+ +G  A+FGE Y D VRV+++G
Sbjct:  570 HVQQRGSLVDAERARFDFSHFEALTPQQIQQIEEVVNAQIRANNEVITQVMDIESAKQ-SGAVALFGEKYSDAVRVLSMG 648          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LEGPC (Alanyl-tRNA synthetase OS=Legionella pneumophila (strain Corby) GN=alaS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV Q+GS+V  E+ RFDFSH + + P+ +++IE +VN QI+A  +V ++   +  AK+ +G  A+FGE Y D VRV+++G
Sbjct:  570 HVQQRGSLVDAERARFDFSHFEALTPQQIQQIEEVVNAQIRANNEVITQVMDIESAKQ-SGAVALFGEKYSDAVRVLSMG 648          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_IDILO (Alanyl-tRNA synthetase OS=Idiomarina loihiensis GN=alaS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  +K+RFDFSH +PV  E L ++E  VN Q++A L + ++   + EAK   G  A+FGE Y + VRVV +G
Sbjct:  571 HVTQKGSLVEADKMRFDFSHFEPVTTEQLAQLEREVNAQVRANLPLQTQLMAIDEAKEA-GAMALFGEKYDEQVRVVRMG 649          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_FRAP2 (Alanyl-tRNA synthetase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=alaS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            H +QKGS+V   KLRFDF+H K +    + +IE++VN+QI+A   V + E +  +AK + G  A+FGE Y D VRV+++G
Sbjct:  571 HAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKAKSL-GAEALFGEKYGDIVRVISMG 649          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_YERE8 (Alanyl-tRNA synthetase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=alaS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  + LRFDFSH + + PE +R +E +VNEQI+  + V ++   L  AK   G  A+FGE Y D VRV+ +G
Sbjct:  581 HVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKE-KGAMALFGEKYDDQVRVLTMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHIFL (Alanyl-tRNA synthetase OS=Shigella flexneri GN=alaS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  + LRFDFSH + + PE +R +E +VN QI+  L + +    L EA +  G  A+FGE Y + VRV+++G
Sbjct:  581 HVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMNL-EAAKAKGAMALFGEKYDERVRVLSMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHIF8 (Alanyl-tRNA synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=alaS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  + LRFDFSH + + PE +R +E +VN QI+  L + +    L EA +  G  A+FGE Y + VRV+++G
Sbjct:  581 HVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMNL-EAAKAKGAMALFGEKYDERVRVLSMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHEWM (Alanyl-tRNA synthetase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=alaS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  E+LRFDFSH + V PE L+ +E +VN QI+    + +    + +AK   G  A+FGE Y D VRVV +G
Sbjct:  579 HVTQKGSLVDAERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSADVMDMDQAKE-RGAMALFGEKYTDEVRVVTMG 657          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_PSEPF7.194e-1245.00Alanyl-tRNA synthetase OS=Pseudomonas fluorescens ... [more]
SYA_OCHA47.194e-1246.25Alanyl-tRNA synthetase OS=Ochrobactrum anthropi (s... [more]
SYA_LEGPH7.194e-1243.75Alanyl-tRNA synthetase OS=Legionella pneumophila s... [more]
SYA_LEGPC7.194e-1243.75Alanyl-tRNA synthetase OS=Legionella pneumophila (... [more]
SYA_IDILO7.194e-1247.50Alanyl-tRNA synthetase OS=Idiomarina loihiensis GN... [more]
SYA_FRAP27.194e-1245.00Alanyl-tRNA synthetase OS=Francisella philomiragia... [more]
SYA_YERE89.395e-1247.50Alanyl-tRNA synthetase OS=Yersinia enterocolitica ... [more]
SYA_SHIFL9.395e-1245.00Alanyl-tRNA synthetase OS=Shigella flexneri GN=ala... [more]
SYA_SHIF89.395e-1245.00Alanyl-tRNA synthetase OS=Shigella flexneri seroty... [more]
SYA_SHEWM9.395e-1247.50Alanyl-tRNA synthetase OS=Shewanella woodyi (strai... [more]

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Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
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