CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_METRJ (Alanyl-tRNA synthetase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=alaS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEW 287
            HV QKGS+V PE+LRFD SH KP++ + L R+E I N  +     V +K   + +A   +G RA+FGE Y D VRVV++G  V+   A P  + +
Sbjct:  581 HVAQKGSLVSPERLRFDISHPKPIEADELARVEDIANAVLLQNAPVVTKLMAVDDA-IASGARALFGEKYGDEVRVVSMGLPVDGEAAQPRARNF 674          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BEII9 (Alanyl-tRNA synthetase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=alaS PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            H+ QKGS+V P++LRFDFSH KPV PE   +IE I N  I     V +K  ++ +A   +G RA+FGE Y D VRVV++G
Sbjct:  581 HIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDAMG-SGARALFGEKYGDEVRVVSMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_THICR (Alanyl-tRNA synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=alaS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDFSH +P+  E L  IE +VN  I     V  +E  + EA +  G  A+FGE Y D VRVV +G
Sbjct:  570 HVGQKGSLVQPERLRFDFSHFEPISAEQLLEIEQLVNHNIMLNAQVMMEEMDI-EAAKAKGAMALFGEKYGDVVRVVDMG 648          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_RHOPA (Alanyl-tRNA synthetase OS=Rhodopseudomonas palustris GN=alaS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVED 257
            H+ QKGS+V P++LRFDF H KP+  + LR++E I N+ +    +V ++   + +A+   G RA+FGE Y D VRVV++G+   D
Sbjct:  581 HIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDAREA-GARALFGEKYGDEVRVVSMGKAARD 664          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_NITHX (Alanyl-tRNA synthetase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=alaS PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            H+ Q+GS+V PE+LRFDF H KP+  + LRRIE I N+ +    +V ++   + +A+   G RA+FGE Y D VRVV++G
Sbjct:  581 HIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDAREA-GARALFGEKYGDEVRVVSMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SACD2 (Alanyl-tRNA synthetase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=alaS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  E+LRFDFSH + V PE L++IES+VNEQI+    V   E    EA +  G  A+FGE Y D VRV+++G
Sbjct:  579 HVTQKGSLVDSERLRFDFSHFEAVKPEELKQIESMVNEQIRLNSPV-ETELCDMEAAQQKGAMALFGEKYGDEVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PELTS (Alanyl-tRNA synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=alaS PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV+Q GS+V PE+LRFDF+H     PE L+++E +VN  + + L V + E +LAEA+++ G  A+FGE Y + VRVV +G
Sbjct:  581 HVNQAGSLVEPERLRFDFTHYAAATPEELQKVEELVNRMVLSALPVEAFETSLAEARKM-GAAALFGEKYGERVRVVKMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LEPIN (Alanyl-tRNA synthetase OS=Leptospira interrogans GN=alaS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE LRFDFSH   +  E +R+IES VNE I+    V +KE ++ +AK+  G  A FGE Y + VRVV +G
Sbjct:  635 HVLQKGSIVSPEYLRFDFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKK-TGAVATFGEKYGERVRVVQMG 713          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LEPIC (Alanyl-tRNA synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=alaS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE LRFDFSH   +  E +R+IES VNE I+    V +KE ++ +AK+  G  A FGE Y + VRVV +G
Sbjct:  635 HVLQKGSIVSPEYLRFDFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKK-TGAVATFGEKYGERVRVVQMG 713          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_GEOTN (Alanyl-tRNA synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=alaS PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQI--KAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV+Q GS+V P++LRFDF+H   V P+ L RIE+IVNEQI     +D+F K   L EAK + G  A+FGE Y D VRVV +G
Sbjct:  583 HVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDIFYK--PLEEAKAM-GAMALFGEKYGDIVRVVKVG 661          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_METRJ1.712e-1343.16Alanyl-tRNA synthetase OS=Methylobacterium radioto... [more]
SYA_BEII92.236e-1350.00Alanyl-tRNA synthetase OS=Beijerinckia indica subs... [more]
SYA_THICR2.921e-1350.00Alanyl-tRNA synthetase OS=Thiomicrospira crunogena... [more]
SYA_RHOPA2.921e-1342.35Alanyl-tRNA synthetase OS=Rhodopseudomonas palustr... [more]
SYA_NITHX2.921e-1346.25Alanyl-tRNA synthetase OS=Nitrobacter hamburgensis... [more]
SYA_SACD23.814e-1352.50Alanyl-tRNA synthetase OS=Saccharophagus degradans... [more]
SYA_PELTS3.814e-1347.50Alanyl-tRNA synthetase OS=Pelotomaculum thermoprop... [more]
SYA_LEPIN3.814e-1351.25Alanyl-tRNA synthetase OS=Leptospira interrogans G... [more]
SYA_LEPIC3.814e-1351.25Alanyl-tRNA synthetase OS=Leptospira interrogans s... [more]
SYA_GEOTN3.814e-1353.66Alanyl-tRNA synthetase OS=Geobacillus thermodenitr... [more]

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Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
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