CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_TREDE (Alanyl-tRNA synthetase OS=Treponema denticola GN=alaS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS +  E+LRFDFSH +P+     + +E +VNE IKA+L V  +   L EAK+I G  A+FGE Y D V+V  IG
Sbjct:  480 HVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNEAIKADLPVTMEVMPLEEAKKI-GAMALFGEKYEDVVKVYKIG 558          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_THIFE (Alanyl-tRNA synthetase OS=Thiobacillus ferrooxidans GN=alaS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDFSH +PV    LR IE +VN  I+  +   ++   +AEA+ + G  A+FGE Y D VRVV +G
Sbjct:  582 HVQQKGSLVNPERLRFDFSHPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAEAQAL-GAMALFGEKYGDEVRVVRMG 660          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PSESM (Alanyl-tRNA synthetase OS=Pseudomonas syringae pv. tomato GN=alaS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  ++LRFDFSH + + PE LR +E IVN +I+    V ++E  +  AK+  G  A+FGE Y D VRV+++G
Sbjct:  579 HVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEETDIDTAKK-KGAMALFGEKYGDSVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_METFK (Alanyl-tRNA synthetase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=alaS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV QKGS+V P+K RFDFSH  PV  + +RRIE IVN +I A     ++   + EA++  G   +FGE Y D VRV+ IG   E
Sbjct:  580 HVQQKGSLVDPDKTRFDFSHNAPVTADEIRRIEDIVNAEILANTPTLARVMPIDEAQK-TGAMMLFGEKYGDEVRVLDIGTSRE 662          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BRASO (Alanyl-tRNA synthetase OS=Bradyrhizobium sp. (strain ORS278) GN=alaS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVED 257
            H+ Q+GS+V P++LRFDF H KP+  E L R+E I N+ +    +V ++   L +A+   G RA+FGE Y D VRVV++G    D
Sbjct:  581 HIAQRGSLVSPDRLRFDFVHPKPITAEELARVEDIANDVVLENAEVTTRLMGLDDAREA-GARALFGEKYGDEVRVVSMGNAARD 664          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BRAJA (Alanyl-tRNA synthetase OS=Bradyrhizobium japonicum GN=alaS PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVED 257
            H+ Q+GS+V P++LRFDF H KP+  E L R+E I N+ +    +V ++   + EA+   G RA+FGE Y D VRVV++GR   +
Sbjct:  582 HIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDEAREA-GARALFGEKYGDEVRVVSMGRTARE 665          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_RHOPS (Alanyl-tRNA synthetase OS=Rhodopseudomonas palustris (strain BisB5) GN=alaS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGR 245
            H+ QKGS+V P++LRFDF H KP+  + LRR+E I N+ I  E D  +      +  R  G RA+FGE Y D VRVV++G+
Sbjct:  581 HIAQKGSMVAPDRLRFDFVHQKPITQDELRRVEDIAND-IVLENDEVTTRLMAVDDAREAGARALFGEKYGDEVRVVSMGK 660          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PARL1 (Alanyl-tRNA synthetase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=alaS PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDFSH KP+ PE +  +E+IVN  I+   +V ++  T  +A     L A+FGE Y + VRV+A+G
Sbjct:  582 HVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPEDAIAAGAL-ALFGEKYGEEVRVLAMG 660          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PARD8 (Alanyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=alaS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFS-KEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV+QKGS V P+ LRFDFSH + V  E +R++E +V E+I+A   +   +   +AEAK + G  A+FGE Y D VRVV  G  VE
Sbjct:  580 HVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKIRANFPLEEHRNMPIAEAKAL-GAMALFGEKYGDEVRVVKYGSSVE 663          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_DECAR (Alanyl-tRNA synthetase OS=Dechloromonas aromatica (strain RCB) GN=alaS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV QKGS V P+K RFDF H +P+  E +RR+E+IVN +I A +   ++   +AEA+++ G   +FGE Y D VRV+ IG   E
Sbjct:  578 HVQQKGSQVDPDKTRFDFVHNQPMTDEEIRRVENIVNAEILANVATETRVLPIAEAQKL-GAMMLFGEKYGDDVRVLDIGSSRE 660          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_TREDE4.982e-1350.00Alanyl-tRNA synthetase OS=Treponema denticola GN=a... [more]
SYA_THIFE4.982e-1350.00Alanyl-tRNA synthetase OS=Thiobacillus ferrooxidan... [more]
SYA_PSESM4.982e-1347.50Alanyl-tRNA synthetase OS=Pseudomonas syringae pv.... [more]
SYA_METFK4.982e-1347.62Alanyl-tRNA synthetase OS=Methylobacillus flagella... [more]
SYA_BRASO4.982e-1343.53Alanyl-tRNA synthetase OS=Bradyrhizobium sp. (stra... [more]
SYA_BRAJA4.982e-1343.53Alanyl-tRNA synthetase OS=Bradyrhizobium japonicum... [more]
SYA_RHOPS6.507e-1346.91Alanyl-tRNA synthetase OS=Rhodopseudomonas palustr... [more]
SYA_PARL16.507e-1348.75Alanyl-tRNA synthetase OS=Parvibaculum lavamentivo... [more]
SYA_PARD86.507e-1348.24Alanyl-tRNA synthetase OS=Parabacteroides distason... [more]
SYA_DECAR6.507e-1346.43Alanyl-tRNA synthetase OS=Dechloromonas aromatica ... [more]

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Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
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