CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_ALKMQ (Alanyl-tRNA synthetase OS=Alkaliphilus metalliredigens (strain QYMF) GN=alaS PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV+Q GS+V PEKLRFDFSH + +    L ++E  VN++I   L+V + EA+L EAK++ G  A+FGE Y D VRVV  G
Sbjct:  583 HVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNVDTVEASLEEAKKM-GAMALFGEKYGDDVRVVKTG 661          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LYSSC (Alanyl-tRNA synthetase OS=Lysinibacillus sphaericus (strain C3-41) GN=alaS PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV+Q GS V P++LRFDFSH   V  E L++IE IVNE++  +++V  +E  + +AK   G  A+FGE Y D VRVV+IG
Sbjct:  613 HVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNEKVWDDIEVVIEEMAIDQAK-AKGAMALFGEKYGDVVRVVSIG 691          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_LEGPL (Alanyl-tRNA synthetase OS=Legionella pneumophila (strain Lens) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV Q+GS+V  E+ RFDFSH +P+ P+ +++IE +VN QI+A  +V ++   +  AK+ +G  A+FGE Y D VRV+++G
Sbjct:  570 HVQQRGSLVDAERARFDFSHFEPLTPQQIQQIEEVVNAQIRANNEVITQVMDIESAKQ-SGAVALFGEKYSDAVRVLSMG 648          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_DESRM (Alanyl-tRNA synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV+Q GS+V P++LRFDF+H   V  E LRRIE IVNE + + L +   E +L++AK + G  A+FGE Y   VRVV +G
Sbjct:  582 HVNQAGSLVEPDRLRFDFTHYAAVTSEELRRIEEIVNEAVLSNLSIEVFETSLSKAKEM-GAAALFGEKYGKQVRVVKMG 660          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BACWK (Alanyl-tRNA synthetase OS=Bacillus weihenstephanensis (strain KBAB4) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV+Q GS+V  E+LRFDFSH   V  + L +IE IVNE+I   +DV   +  + EAK + G  A+FGE Y D VRVV +G
Sbjct:  584 HVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVAISQKAIEEAKEM-GAMALFGEKYGDVVRVVQVG 662          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BACFR (Alanyl-tRNA synthetase OS=Bacteroides fragilis GN=alaS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFS-KEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV+QKGS+V P+ LRFDFSH + V  E LR++E +VN +I+A + +   +   + EAK + G  A+FGE Y D VRV+  G  +E
Sbjct:  580 HVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKIRANVPLQEHRNIPIEEAKEL-GAIALFGEKYGDHVRVIQFGSSIE 663          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BACFN (Alanyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFS-KEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV+QKGS+V P+ LRFDFSH + V  E LR++E +VN +I+A + +   +   + EAK + G  A+FGE Y D VRV+  G  +E
Sbjct:  580 HVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKIRANVPLQEHRNIPIEEAKEL-GAIALFGEKYGDHVRVIQFGSSIE 663          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_AZOSE (Alanyl-tRNA synthetase OS=Azoarcus sp. (strain EbN1) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV QKGS V P+K RFDF+H  P+ PE +R +E +VN +I A +   ++  ++ +A++ +G   +FGE Y D VRV+AIG   E
Sbjct:  580 HVQQKGSQVDPDKTRFDFAHTAPLSPEEIREVEDLVNAEILANVATEARVMSIDDAQK-SGAMMLFGEKYGDEVRVLAIGSSKE 662          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_ALKOO (Alanyl-tRNA synthetase OS=Alkaliphilus oremlandii (strain OhILAs) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDL 260
            HV Q GS+V P++LRFDF+H + +  + + +IE  VN+QI   LDV + E ++ +AK+I G +A+FGE Y D VRVV +G    +L
Sbjct:  583 HVHQAGSLVTPDRLRFDFTHFEGLTKDQITQIEEKVNQQILMALDVRTFETSIEDAKKI-GAQALFGEKYGDVVRVVKVGEYSTEL 667          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHESW (Alanyl-tRNA synthetase OS=Shewanella sp. (strain W3-18-1) GN=alaS PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDFSH + V P  L+++E +VN QI+   ++   E  + EAK   G  A+FGE Y   VRVV +G
Sbjct:  579 HVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEMAIDEAKE-KGAMALFGEKYDAQVRVVTMG 657          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_ALKMQ6.507e-1351.25Alanyl-tRNA synthetase OS=Alkaliphilus metalliredi... [more]
SYA_LYSSC8.498e-1350.00Alanyl-tRNA synthetase OS=Lysinibacillus sphaericu... [more]
SYA_LEGPL8.498e-1345.00Alanyl-tRNA synthetase OS=Legionella pneumophila (... [more]
SYA_DESRM8.498e-1350.00Alanyl-tRNA synthetase OS=Desulfotomaculum reducen... [more]
SYA_BACWK8.498e-1350.00Alanyl-tRNA synthetase OS=Bacillus weihenstephanen... [more]
SYA_BACFR8.498e-1345.88Alanyl-tRNA synthetase OS=Bacteroides fragilis GN=... [more]
SYA_BACFN8.498e-1345.88Alanyl-tRNA synthetase OS=Bacteroides fragilis (st... [more]
SYA_AZOSE8.498e-1344.05Alanyl-tRNA synthetase OS=Azoarcus sp. (strain EbN... [more]
SYA_ALKOO8.498e-1345.35Alanyl-tRNA synthetase OS=Alkaliphilus oremlandii ... [more]
SYA_SHESW1.110e-1248.75Alanyl-tRNA synthetase OS=Shewanella sp. (strain W... [more]

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Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
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