CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SODGM (Alanyl-tRNA synthetase OS=Sodalis glossinidius (strain morsitans) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V    LRFDFSH + + PE +RR+E IVNEQI+  L + +    L +A R  G  A+FGE Y   VRV+++G
Sbjct:  581 HVGQKGSLVNDHYLRFDFSHNEAMKPEQIRRVEEIVNEQIRCNLPIQTDIMALEDA-RNKGAMALFGEKYEAQVRVLSMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHESR (Alanyl-tRNA synthetase OS=Shewanella sp. (strain MR-7) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDFSH + V P  L+++E +VN QI+   ++   E  + EAK   G  A+FGE Y   VRVV +G
Sbjct:  579 HVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEMAIDEAKE-KGAMALFGEKYDAQVRVVTMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHESM (Alanyl-tRNA synthetase OS=Shewanella sp. (strain MR-4) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDFSH + V P  L+++E +VN QI+   ++   E  + EAK   G  A+FGE Y   VRVV +G
Sbjct:  579 HVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEMAIDEAKE-KGAMALFGEKYDAQVRVVTMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHESA (Alanyl-tRNA synthetase OS=Shewanella sp. (strain ANA-3) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDFSH + V P  L+++E +VN QI+   ++   E  + EAK   G  A+FGE Y   VRVV +G
Sbjct:  579 HVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEMAIDEAKE-KGAMALFGEKYDAQVRVVTMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_SHEON (Alanyl-tRNA synthetase OS=Shewanella oneidensis GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V PE+LRFDFSH + V P  L+++E +VN QI+   ++   E  + EAK   G  A+FGE Y   VRVV +G
Sbjct:  579 HVTQKGSLVDPERLRFDFSHFEAVKPFELKQVEELVNTQIRRNHELKVAEMAIDEAKE-KGAMALFGEKYDSQVRVVTMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PSEU2 (Alanyl-tRNA synthetase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=alaS PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  ++LRFDFSH + +  E LR +E IVN +I+   +V ++E  +  AK+  G  A+FGE Y D VRV+++G
Sbjct:  579 HVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEETDIDTAKK-KGAMALFGEKYGDSVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PSEHT (Alanyl-tRNA synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  E+LRFDFSH + V  E LR IE +VN++I+    + ++   + +AK   G  A+FGE Y D VRVV IG
Sbjct:  572 HVGQKGSLVQAERLRFDFSHFEAVTKEELREIERVVNDEIRCNFALSTELMAIDDAK-AKGAMALFGEKYDDEVRVVTIG 650          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PORGI (Alanyl-tRNA synthetase OS=Porphyromonas gingivalis GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFS-KEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV+QKGS V PE LRFDFSH   + PE +R++E +V+E+I+A+      ++  +AEA+ + G  A+FGE Y + VRV+  G  VE
Sbjct:  581 HVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEELVSERIRADFQREEFRDVPIAEAQAM-GAMALFGEKYGEEVRVLKYGSSVE 664          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PHOPR (Alanyl-tRNA synthetase OS=Photobacterium profundum GN=alaS PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V P+ LRFDFS+ + V PE LR IE +VNEQI+    + +    +  AK+  G  A+FGE Y D VRV+++G
Sbjct:  579 HVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNIMDIESAKQ-KGAMALFGEKYDDEVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_CARHZ (Alanyl-tRNA synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV+Q GS+V PE+LRFDF+H + V  E LR+IE+IVNE I   L V     TL EA++  G+ A+F E Y D VRVV IG
Sbjct:  581 HVNQAGSLVTPERLRFDFTHFEGVSDEDLRKIENIVNEAILRNLLVQIDYTTLDEARKA-GVIALFDEKYGDLVRVVKIG 659          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_SODGM1.450e-1248.75Alanyl-tRNA synthetase OS=Sodalis glossinidius (st... [more]
SYA_SHESR1.450e-1248.75Alanyl-tRNA synthetase OS=Shewanella sp. (strain M... [more]
SYA_SHESM1.450e-1248.75Alanyl-tRNA synthetase OS=Shewanella sp. (strain M... [more]
SYA_SHESA1.450e-1248.75Alanyl-tRNA synthetase OS=Shewanella sp. (strain A... [more]
SYA_SHEON1.450e-1248.75Alanyl-tRNA synthetase OS=Shewanella oneidensis GN... [more]
SYA_PSEU21.450e-1246.25Alanyl-tRNA synthetase OS=Pseudomonas syringae pv.... [more]
SYA_PSEHT1.450e-1248.75Alanyl-tRNA synthetase OS=Pseudoalteromonas halopl... [more]
SYA_PORGI1.450e-1245.88Alanyl-tRNA synthetase OS=Porphyromonas gingivalis... [more]
SYA_PHOPR1.450e-1248.75Alanyl-tRNA synthetase OS=Photobacterium profundum... [more]
SYA_CARHZ1.450e-1253.75Alanyl-tRNA synthetase OS=Carboxydothermus hydroge... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
back to top