CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BARQU (Alanyl-tRNA synthetase OS=Bartonella quintana GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV QKGS+VLP++LRFDFSH K V  E L++IE + N+ +    +V +    L +A    G  A+FGE Y D VRVV++G  +E
Sbjct:  581 HVTQKGSLVLPDRLRFDFSHPKSVSSEELKKIEDLANDIVLQNSEVTTHLMALDDAIS-EGAMALFGEKYGDEVRVVSMGNPLE 663          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_BACV8 (Alanyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=alaS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 254
            HV+QKGS+V PE LRFDFSH + V  E LR +E +VN +I+  + +        E  +  G  A+FGE Y D VRVV  G  +E
Sbjct:  579 HVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIRENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGNSIE 662          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_THET8 (Alanyl-tRNA synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=alaS PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAI-GRKVEDLLADPENKE 284
            HV Q GS+V P++LRFDF+H +P+ PE L R+E +VN  I A+  V  +   L EA++  G  A+FGE Y + VRVV + G  +E L    E+KE
Sbjct:  591 HVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIMADFPVTWRYMPLEEARK-EGAMALFGEKYGEVVRVVRVEGSPLEGL----ESKE 680          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_THET2 (Alanyl-tRNA synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=alaS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAI-GRKVEDLLADPENKE 284
            HV Q GS+V P++LRFDF+H +P+ PE L R+E +VN  I A+  V  +   L EA++  G  A+FGE Y + VRVV + G  +E L    E+KE
Sbjct:  591 HVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIMADFPVTWRYMPLEEARK-EGAMALFGEKYGEVVRVVRVEGSPLEGL----ESKE 680          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_RHOPB (Alanyl-tRNA synthetase OS=Rhodopseudomonas palustris (strain BisB18) GN=alaS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGR 245
            H+ QKGS+V  ++LRFDF H KP+  + LRR+E I NE +    +V ++   + +A+   G RA+FGE Y D VRVV +G+
Sbjct:  581 HIAQKGSLVAEDRLRFDFVHQKPISADELRRVEDIANEVVLENDEVTTRLMAVDDAREA-GARALFGEKYGDEVRVVTMGK 660          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PSEA7 (Alanyl-tRNA synthetase OS=Pseudomonas aeruginosa (strain PA7) GN=alaS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  ++LRFDFSH + + PE L+ +E IVN +I+   +V ++E  +  AK   G  A+FGE Y D VRV+++G
Sbjct:  579 HVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEDIVNAEIRRNTEVETEETDIDTAK-AKGAMALFGEKYGDQVRVLSMG 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_PELUB (Alanyl-tRNA synthetase OS=Pelagibacter ubique GN=alaS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V  ++LRFDFSH KP+  E +R+IE  VN  I+ + +V ++  T  EA   NG  A+FGE Y D VRV+++G
Sbjct:  581 HVTQKGSLVQSDRLRFDFSHMKPISDEEIRKIEHYVNSIIEKKSEVKTRIMTPKEAVE-NGALALFGEKYGDEVRVLSMG 659          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_STAES (Alanyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=alaS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVV 233
            HV+Q GS+V PE+LRFDFSH  P+  E +  +E  VNE+I   +DV  +E ++ EAK I G  A+FGE Y D VRVV
Sbjct:  582 HVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQEMSIEEAKSI-GAMALFGEKYGDIVRVV 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_STAEQ (Alanyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=alaS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVV 233
            HV+Q GS+V PE+LRFDFSH  P+  E +  +E  VNE+I   +DV  +E ++ EAK I G  A+FGE Y D VRVV
Sbjct:  582 HVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQEMSIEEAKSI-GAMALFGEKYGDIVRVV 657          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_MARAV (Alanyl-tRNA synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=alaS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIG 242
            HV QKGS+V P+KLRFDFSH + V PE LR IE  VNEQI     V   + T  +  +  G  A+FGE Y D VRV+ +G
Sbjct:  579 HVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERTVNEQILENTPV-DIDITDMDTAKEKGAMALFGEKYGDVVRVLTMG 657          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_BARQU1.450e-1246.43Alanyl-tRNA synthetase OS=Bartonella quintana GN=a... [more]
SYA_BACV81.450e-1245.24Alanyl-tRNA synthetase OS=Bacteroides vulgatus (st... [more]
SYA_THET81.893e-1245.26Alanyl-tRNA synthetase OS=Thermus thermophilus (st... [more]
SYA_THET21.893e-1245.26Alanyl-tRNA synthetase OS=Thermus thermophilus (st... [more]
SYA_RHOPB1.893e-1244.44Alanyl-tRNA synthetase OS=Rhodopseudomonas palustr... [more]
SYA_PSEA71.893e-1246.25Alanyl-tRNA synthetase OS=Pseudomonas aeruginosa (... [more]
SYA_PELUB1.893e-1248.75Alanyl-tRNA synthetase OS=Pelagibacter ubique GN=a... [more]
SYA_STAES2.472e-1251.95Alanyl-tRNA synthetase OS=Staphylococcus epidermid... [more]
SYA_STAEQ2.472e-1251.95Alanyl-tRNA synthetase OS=Staphylococcus epidermid... [more]
SYA_MARAV2.472e-1251.25Alanyl-tRNA synthetase OS=Marinobacter aquaeolei (... [more]

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Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
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