CX288298

Overview
NameCX288298
Unique NameCX288298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 61/182 (33.52%), Postives = 91/182 (50.00%), Query Frame = 1
Query:  193 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILGSLPIGFAV 729
            PGEL      +A +AEFI+  +F++    + M   K      T   G+   + A    +FV V   A ISGGH+NPAVT G F+   +SL +A+ Y V Q LG++    ++K   G    G  +  A V A      + +  EI+ TF LVYTV+ +A D K+      + ++  + IGF V
Sbjct:   11 PGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGA-----WNAVVFEIVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIV 183          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.176e-15
Identity = 57/182 (31.32%), Postives = 91/182 (50.00%), Query Frame = 1
Query:  193 PGELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILGSLPIGFAV 729
            PGE       RA  AEF +  +F++    + M  G +  +   +  G+   + +    +FV V   A +SGGH+NPAVT G F+   ++L RA+ Y + Q LGA+    ++K   G      +   A  +++G T  + +  EI+ TF LVYTV+ +A D K+      + I+  L IG  V
Sbjct:   11 PGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGG-----METAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK----GDIGIIAPLAIGLIV 183          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15
Identity = 63/188 (33.51%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  184 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK---GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILGSLPIGFAV 729
            ++ PG LK      A +AEFI+T +F++    + M   K     +T   G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y + Q LG+     +++   G +  G +G           G +  + L  EI+ TF LVYTV+ +A D K+ +  +  PI     IGF V
Sbjct:   14 VYHPGALK------AALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG---------LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPI----AIGFIV 182          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 58/177 (32.77%), Postives = 86/177 (48.59%), Query Frame = 1
Query:  196 GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG--ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILGSLPIG 720
            GE     F+R  + E + TFLF++I V   M    + TK ST G    A A G  + V V  TAG  ISGGH+NPAVTL L +   ++L R+  Y+  Q L +     +++   G      LA   + +A G     G+ AE + TF L++ +++     R       P+L  L +G
Sbjct:   10 GEASEPDFFRGVLGELVLTFLFVFIGVGAAM-TDGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGG-----LATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKLLPGAGPLLTGLLVG 180          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 63/185 (34.05%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  184 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILGSLPIGFAV 729
            ++ PG LK      A  AEFI+T +F++    + M   K       +  G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y V Q LG+     +++   G    G+  G   +   G +  + L  EI+ TF LVYTV+ +A D K+ +  +  PI     IGF V
Sbjct:   14 VYHPGALK------AAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTG----GQATGTFGLT--GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPI----AIGFIV 182          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 65/186 (34.95%), Postives = 90/186 (48.39%), Query Frame = 1
Query:  193 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG-LGA---EIIGTFVLVYTVF-SATDAKRSARDSHVPILGSLPIGFAV 729
            P E       +A +AEFI+T +F+     + M   K     +T   G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R + Y + Q LG++    ++K            GG  V A G + G G L A   EI+ TF LVYTV+ +A D K  +  +  PI     IGF V
Sbjct:   11 PDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK---------FATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPI----AIGFIV 183          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  223 RAGIAEFIATFLFLYISVLTVMGVVK------SNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK----GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILGSLPIGFAV 729
            RA +AEF++TF+F++    +++ + K      ++T  +T G +  +A A    +F  V     +SGGH+NPAVT    +  ++S+ RA++Y V Q +GAI    +++    G    G +         VA G ++  GL  EII TF LVY V+S A D KR +    + I+  L IG  V
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFH---------VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIV 191          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 60/177 (33.90%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  223 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI-CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKRSARDSHVPILGSLPIGFAV 729
            +AG+AEFI+TF+F++    + +   K  ++   +  G+   + A    +FV V   A ISGGH+NPAV  G F+   ++L R + Y++ Q LG+I C A +V               ++V A G ++G G+G     EI+ TF LVYTV+ +A D K+     ++ I+  + IGF V
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLV-----------FVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIV 181          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 59/176 (33.52%), Postives = 86/176 (48.86%), Query Frame = 1
Query:  223 RAGIAEFIATFLFLYISVLT--VMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG----LGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILGSLPIGFAV 729
            RA +AEFI+T +F++    +      +  N   +  G+   A A    +FV V   A ISGGH+NPAVT G+ L   ++L R + Y + Q LG++    ++             GG  + A G + G G    L  EI+ TF LVYTV+ +A D K  +  +  PI     IGF V
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL---------SFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPI----AIGFIV 184          
BLAST of CX288298 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 54/169 (31.95%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILG 705
            E+++  F+R+ I+E +A+F++++I      GV    +  S   +   A A G  +  L  C   ISG HINPAVTL L + R +S  RA  Y+  QC G I GA ++ G    G  G L    +  A      +  G E I TF++V   F +TD  +    +    +G
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSA-ALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGNSAASIG 223          
The following BLAST results are available for this feature:
BLAST of CX288298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TIP12_ORYSJ1.276e-1533.52Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH2.176e-1531.32Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP11_ORYSJ6.332e-1533.51Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE8.270e-1532.77Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP11_MAIZE1.411e-1434.05Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP11_ARATH1.411e-1434.95Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP32_ARATH1.842e-1433.15Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP1_MEDSA1.842e-1433.90Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP12_ARATH1.842e-1433.52Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
BIB_DROME1.842e-1431.95Neurogenic protein big brain OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionC01018H06SK Veg1 Citrus clementina cDNA clone C01018H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288298 ID=CX288298; Name=CX288298; organism=Citrus clementina; type=EST; length=749bp
GGCACAAACAAAAAAGCAAGTGCTTCTTATTGACTGTTTTGTGTTTTTGA
GGGACTAGCAGAAATGGAAGGTAAAGAAGAGGATGTTAGACTGGGAGCCA
ACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCGGCTCAGACCCAAGAT
GGGAAGGACTACGTTGAGCCCCCACCGGCGCCGCTCTTTGAGCCCGGCGA
GCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAGCCGAGTTCATAGCCA
CTTTTCTTTTCTTGTACATCTCCGTACTGACAGTGATGGGCGTCGTCAAG
TCCAATACCAAGTGCTCAACCGTCGGCATTCAAGGGATTGCATGGGCCTT
CGGTGGCATGATCTTCGTGCTCGTTTACTGCACAGCTGGCATCTCGGGTG
GTCATATCAACCCGGCGGTGACACTCGGCCTGTTCTTGGCGAGGAAGCTG
TCGCTGACACGTGCACTTTTCTACATGGTGATGCAGTGTCTGGGAGCCAT
CTGCGGTGCTGGCGTTGTAAAGGGTTTCATGGGTGCCGGCCAATACGGGC
GGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCTACACCAAGGGTGAT
GGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTTGTCTACACAGTTTT
CTCTGCCACTGATGCCAAACGGAGCGCCAGGGACTCTCATGTTCCTATTT
TGGGCTCTCTGCCAATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCTAC
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