CX288388

Overview
NameCX288388
Unique NameCX288388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 90/269 (33.46%), Postives = 136/269 (50.56%), Query Frame = 3
Query:   72 IQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNR-----IDRASYPKNSTY---NRRLDE----------EQGDFPNWVSAKNRKLLQAPRINANVIVAQDG-------TGNYRTVSEAISAASGNRF------VIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            + + LG  +T QQTC D +    + A++     I   +  L++L S  L LV+      + R    K   +   N+ + E          +  D        NR L +    +   I+ ++        T N+ T++EA++AA  + F      VIY +AG+Y+E   I   K  I LIGDG   TII+G+ +   G +   ++TF + GD F+A D+ F NTAGP+  QA+A+   +D + FYRCS  GYQDTLY  +LRQFYR+ DI
Sbjct:  190 VTSLLGGVVTNQQTCLDGL----VDAKSGFATAIGTPLGNLTRLYSVSLGLVSHALNRNLKRYKGSKGKIFGGGNKPVREPLETLIKVLRKTCDKGKDCRKANRNLGELGETSGGSILVREAVTVGPYETDNFPTITEAVAAAPNHTFPEQGYFVIYARAGLYEEYVVISNKKRNIMLIGDGINKTIISGNHSFIDGWTTYNSSTFAVVGDRFVAVDVTFRNTAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDI 454          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.491e-27
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  360 NVIVAQDGTGNYRTVSEAISAASGN---RFVIYVKAGVYKEKIRTNKDGITL--IGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            +V+VA+DG+GN+ TV  A++AA  +   RFVIY+K G Y E +  +K    L  IGDG   T I G+ +   G +   ++T  + G GFIAR I F N AGP   QA+AL   +D + FY+CS  GYQDTLY  +LRQFY + D+
Sbjct:    9 DVVVAKDGSGNFTTVGAAVAAAKDSSTARFVIYIKEGAYFEYVDVDKKKTNLMFIGDGIGKTWIKGNRSVVDGWTTFRSSTVAVVGTGFIARGISFENYAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYSECDV 153          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 81/251 (32.27%), Postives = 125/251 (49.80%), Query Frame = 3
Query:   69 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDR-----ASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGN--YRTVSEAISAASGN----RFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARR-GTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            D + W+ AAL +Q  C   + ++  +   +V+  I+   + L  LT N L+++   D       S+ + +T      E+ G      +     L     +  +V V ++G  +  Y+TV EA+ +A       +FVI ++ GVY+E +R    K  +  IGDG   T+ITG  N  + G +   +AT  + GDGF+ARD+   NTAG    QA+A    SD +V   C   G QDTLYA +LRQFY+   I
Sbjct:  189 DARAWMSAALAYQFDCWSGLKTV--NDTKQVVDTITF-FEGLVNLTGNALSMMLSFDSFGDDVVSWIRPATERDGFWEKAGPSLGSGTGTEASLGFPSGLTEDVTVCKNGGKDCKYKTVQEAVDSAPDTNRTVKFVIRIREGVYEETVRVPFEKKNVVFIGDGMGKTVITGSLNVGQPGMTTFESATVGVLGDGFMARDLTIENTAGADAHQAVAFRSDSDFSVLENCEFLGNQDTLYAHSLRQFYKQCRI 436          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  303 PNWVSAKNRKLL----QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRD 770
            P+W+S  ++K L    +  +   +++VA+D TGNY  V+ AI+AA   S  RFVIY+K  +Y E   I   K  +TLI DG+ +TIIT + ++        TATF   GDGFI  D+ F NT  P     + L V  D ++ YRC +  YQD LY    RQ YR+
Sbjct:   54 PSWLSHVDKKDLYLNDETLKKITDILVAKDVTGNYNIVNVAIAAAPQHSQKRFVIYIKTSIYVEIVVIGNMKSNLTLIADGQDSTIITFNLSSSNSKRTFNTATFASNGDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYRE 218          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.147e-14
Identity = 52/151 (34.44%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  363 VIVAQDGTGNYRTVSEAI-SAASGN--RFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARR----------GTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRD 770
            V V+QDG+G+Y +V +AI S   GN  R VI +  G+Y++ +     K+ IT  G     T++T ++ A +          GT   G  +  + G+ FIA +I F N+A     QA+A+ V +D   FY C   G+QDTLY    +Q+ +D
Sbjct:    7 VRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPEITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKD 157          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 51/144 (35.42%), Postives = 72/144 (50.00%), Query Frame = 3
Query:  369 VAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRD 770
            V ++G  N+ TV  A+ A    S  R VI++ +G+Y EK  I   K  ITL G G   T I  +D A         AT  + G  F+A++I F N A     G  G QA+A+ +A D + F  C   G QDTL+    R +++D
Sbjct:   93 VDKNGCCNFTTVQSAVDAVGNFSQRRNVIWINSGMYYEKVVIPKTKPNITLQGQGFDITAIAWNDTAYSANGTFYCATVQVFGSQFVAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKD 236          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  306 NWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISA---ASGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYT--TIITGDDNAR------RGTSMPGTATFTITGDGFIARDIGFHNT----AGPQGEQALALNVASDHTVFYRCSIAGYQDTLY 740
            NWV+        A  +   ++V ++G G+  TV  A+     ++  R  I++  G+Y+EK+    +K  I+ IG+  Y   T+I+  D A       +      TA+ +I  D F A  I F NT    AG QG QA+AL +  D  VFYR  + G QDTL+
Sbjct:   63 NWVTTNANANANATNVRRVIVVDKNGGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKVIVPKSKPYISFIGNESYAGDTVISWSDKASDLGCDGKELGTYRTASVSIESDFFCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLF 224          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 61/198 (30.81%), Postives = 97/198 (48.99%), Query Frame = 3
Query:  261 STYNRRLDEEQGDFPNWV------------SAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNAR----RGTSMP--GTATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRD 770
            +T + R    + +F  WV            +AKN KL  +  +  +    +   G++  + +AI +    +  R VI V AGVYKEK+     K  IT+ G+G   T +   D A+    +G  M    +A+F +    F+A++I F NT      G  G+QA+AL V++D+  F+ C + G QDTLY    R +Y+D
Sbjct:   44 NTTSDRTQNPEDEFMKWVRFVGSLKHSVFKAAKN-KLFPSYTLTVH---KKSNKGDFTKIQDAIDSLPLINFVRVVIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPDSKGNPMGTYNSASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKD 237          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 50/147 (34.01%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  360 NVIVAQDGTGNYRTVSEAI-SAASGN--RFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGP-----QGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRD 770
            N  V Q+G G+++T++EAI S  +GN  R +I +  GVYKEK+  +  K  ITL G      ++T D  A +  ++  +AT  +  D F+A +I   N+A       +G QAL++ ++ +   FY C   GYQDT+       F++D
Sbjct:   42 NTNVKQNGRGHFKTITEAINSVRAGNTRRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTFDGTAAQYGTVD-SATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKD 187          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 46/150 (30.67%), Postives = 79/150 (52.67%), Query Frame = 3
Query:  354 NANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQG------EQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRD 770
            N ++IV  +G G+Y +V +AI A    + N  +++V+ G+YKE++    NK  I + G+GK  T+I   ++++       +ATF +  + F+A  I   N A P G       Q++A  VA+D   FY C+     +TL+    R +Y +
Sbjct:   43 NRSIIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKERVHIPENKPFIFMRGNGKGKTVI---ESSQSSVDNVASATFKVEANHFVAFGISIRNDA-PVGMAFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHE 188          
The following BLAST results are available for this feature:
BLAST of CX288388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
PME47_ARATH1.182e-2733.46Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME_ACTDE4.491e-2745.52Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME64_ARATH1.035e-2332.27Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME57_ARATH1.495e-2240.00Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]
PME31_ARATH1.147e-1434.44Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME8_ARATH3.691e-1335.42Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME62_ARATH3.691e-1332.72Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME53_ARATH4.820e-1330.81Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME63_ARATH1.402e-1234.01Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PME67_ARATH1.187e-1130.67Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01019H08SK Veg1 Citrus clementina cDNA clone C01019H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288388 ID=CX288388; Name=CX288388; organism=Citrus clementina; type=EST; length=781bp
GGATTCGGCCGAGGAACGGCTAGAGAATCACTATTAGCCCTCAAAATTCC
CCAACAAAAAACAAGCATGACATCCAAACGTGGCTCGGCGCTGCGTTGAC
TTTCCAGCAAACTTGTAAAGACTCTGTGAATAGCCTCGGTCTCTCAGCGA
GAAATGAGGTTATCAAAAAAATATCTCAAAAAATGGATTATTTGTCTCAA
CTGACCAGTAATCCTTTAGCCCTTGTCAACAGGATAGACAGGGCTAGTTA
CCCAAAGAACAGCACATATAATCGGCGTCTAGATGAGGAACAAGGTGATT
TTCCCAACTGGGTATCGGCGAAAAATAGGAAACTGCTGCAGGCCCCGCGC
ATAAATGCAAATGTGATTGTGGCTCAAGATGGAACTGGCAATTATAGAAC
TGTTTCGGAAGCTATCAGTGCTGCTTCTGGAAATCGTTTTGTGATTTATG
TGAAGGCAGGTGTTTATAAGGAGAAAATTCGAACTAACAAGGACGGTATT
ACTTTGATAGGAGATGGCAAATACACTACTATTATTACTGGTGATGATAA
TGCTCGTAGAGGCACTTCCATGCCTGGCACCGCCACTTTCACAATCACAG
GTGATGGATTTATCGCACGAGATATCGGATTTCATAACACAGCAGGACCC
CAAGGAGAGCAAGCATTAGCTCTAAACGTAGCCTCAGATCATACGGTCTT
TTACAGGTGCAGCATTGCAGGCTACCAAGACACACTATACGCCCTCGCTC
TGCGTCAGTTCTACAGAGACACCGACATCTA
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