CX288393

Overview
NameCX288393
Unique NameCX288393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_CITK8 (Glycine dehydrogenase [decarboxylating] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.985e-36
Identity = 68/102 (66.67%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+I+H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAQMAGMQVVVVACDKNGNIDLADLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_BURPP (Glycine dehydrogenase [decarboxylating] OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.985e-36
Identity = 65/102 (63.73%), Postives = 86/102 (84.31%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRNVC+IP SAHGTNPA+A M GM++V V  DA+GN++IE+L+K A  + D L+ +M+TYPSTHGV+E+ + EIC+I+H +GGQVY+DGANMNA VGLT+PG
Sbjct:  612 HRNVCLIPASAHGTNPASAQMAGMQVVVVACDAQGNVDIEDLKKKAGQHADKLAAIMITYPSTHGVFEQNVREICEIVHAHGGQVYVDGANMNAMVGLTAPG 713
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHESH (Glycine dehydrogenase [decarboxylating] OS=Shewanella sediminis (strain HAW-EB3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.205e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRNVC+IP SAHGTNPA+A M GMKIV    D  GN+++E+L+  A    +NLS +M+TYPSTHGVYEE + EIC++IH +GGQVY+DGANMNAQVGLT+PG
Sbjct:  595 HRNVCLIPQSAHGTNPASAQMAGMKIVVTACDKAGNVDMEDLKAKAAEVAENLSCIMITYPSTHGVYEETVSEICEVIHQHGGQVYLDGANMNAQVGLTTPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHEHH (Glycine dehydrogenase [decarboxylating] OS=Shewanella halifaxensis (strain HAW-EB4) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.205e-36
Identity = 68/102 (66.67%), Postives = 82/102 (80.39%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRNVC+IP SAHGTNPA+A + GMKIV    D  GN+++E+L+  A    DNLS +M+TYPSTHGVYEE + EIC IIH +GGQVY+DGANMNAQVGLT+PG
Sbjct:  599 HRNVCLIPQSAHGTNPASAQLAGMKIVVTACDKAGNVDMEDLKTKAAEVADNLSCIMITYPSTHGVYEETVSEICDIIHQHGGQVYLDGANMNAQVGLTTPG 700
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHEFN (Glycine dehydrogenase [decarboxylating] OS=Shewanella frigidimarina (strain NCIMB 400) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.205e-36
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GMK+V    D +GN+++E+LR  A    D+LS +M+TYPSTHGVYEE I E+C+I+H  GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMKVVVTACDKQGNVDLEDLRTKAAELADSLSCIMITYPSTHGVYEESIREVCEIVHQYGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_IDILO (Glycine dehydrogenase [decarboxylating] OS=Idiomarina loihiensis GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.205e-36
Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A M  MK+V V  D  GN+++++L+  AE   +NLS +MVTYPSTHGVYEEGI +IC ++H+ GGQVYMDGANMNAQVG+TSPG
Sbjct:  596 HRNICLIPSSAHGTNPASAQMMNMKVVVVDCDKHGNVDMDDLKAKAEEAGENLSCIMVTYPSTHGVYEEGIKDICDLVHNYGGQVYMDGANMNAQVGVTSPG 697
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_ESCF3 (Glycine dehydrogenase [decarboxylating] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.205e-36
Identity = 68/102 (66.67%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+I+H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_DEIRA (Glycine dehydrogenase [decarboxylating] OS=Deinococcus radiodurans GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.205e-36
Identity = 64/102 (62.75%), Postives = 85/102 (83.33%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+AAM GM++V V TD +GNI+ ++L+  AEA+ D+L+ LM+TYPSTHGVYEE + ++C +IH +GGQVY+DGANMNA VG+  PG
Sbjct:  583 HRNICLIPASAHGTNPASAAMMGMQVVVVKTDEQGNIDFDDLKAQAEAHSDHLAALMITYPSTHGVYEENVRDVCDLIHQHGGQVYLDGANMNAMVGVAKPG 684
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHISS (Glycine dehydrogenase [decarboxylating] OS=Shigella sonnei (strain Ss046) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHIFL (Glycine dehydrogenase [decarboxylating] OS=Shigella flexneri GN=gcvP PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
The following BLAST results are available for this feature:
BLAST of CX288393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_CITK83.985e-3666.67Glycine dehydrogenase [decarboxylating] OS=Citroba... [more]
GCSP_BURPP3.985e-3663.73Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_SHESH5.205e-3665.69Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHEHH5.205e-3666.67Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHEFN5.205e-3664.71Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_IDILO5.205e-3665.69Glycine dehydrogenase [decarboxylating] OS=Idiomar... [more]
GCSP_ESCF35.205e-3666.67Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_DEIRA5.205e-3662.75Glycine dehydrogenase [decarboxylating] OS=Deinoco... [more]
GCSP_SHISS6.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]
GCSP_SHIFL6.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]

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Properties
Property NameValue
Genbank descriptionC01020A02SK Veg1 Citrus clementina cDNA clone C01020A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288393 ID=CX288393; Name=CX288393; organism=Citrus clementina; type=EST; length=328bp
CGAGGGGCAAGAGGAGACATCACCGCAATGTGTGCATTATACCCGTGTCA
GCCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGT
TTCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGA
AGGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTAC
CCTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGAT
AATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATG
CTCAGGTCGGTCTGACAAGCCCTGGTTA
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