CX288393

Overview
NameCX288393
Unique NameCX288393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHIF8 (Glycine dehydrogenase [decarboxylating] OS=Shigella flexneri serotype 5b (strain 8401) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHIDS (Glycine dehydrogenase [decarboxylating] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLADLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHIBS (Glycine dehydrogenase [decarboxylating] OS=Shigella boydii serotype 4 (strain Sb227) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHIB3 (Glycine dehydrogenase [decarboxylating] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHEPA (Glycine dehydrogenase [decarboxylating] OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 69/102 (67.65%), Postives = 82/102 (80.39%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GMKIV    D  GNI++ +L+  A    DNLS +MVTYPSTHGVYEE I EIC++IH +GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMKIVVTACDKAGNIDMADLKAKAAEVADNLSCIMVTYPSTHGVYEETIGEICEVIHQHGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_FLAJ1 (Glycine dehydrogenase [decarboxylating] OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 323
            HRNVC+IP SAHGTNPA+AAM GMKI+   T  +GNI++E+LR+ A  ++D+LS LMVTYPSTHGV+E  I EI K+IH+NGG VYMDGANMNAQVGLT+P
Sbjct:  586 HRNVCLIPSSAHGTNPASAAMAGMKIIVTKTTPEGNIDVEDLREKAIEHKDDLSCLMVTYPSTHGVFESSIIEITKLIHENGGLVYMDGANMNAQVGLTNP 686
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_ECOUT (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain UTI89 / UPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_ECOSM (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLADLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_ECOSE (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain SE11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_ECOLU (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE   DNLS +MVTYPSTHGVYEE I E+C+++H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLADLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPG 695
The following BLAST results are available for this feature:
BLAST of CX288393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_SHIF86.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]
GCSP_SHIDS6.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]
GCSP_SHIBS6.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]
GCSP_SHIB36.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]
GCSP_SHEPA6.798e-3667.65Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_FLAJ16.798e-3669.31Glycine dehydrogenase [decarboxylating] OS=Flavoba... [more]
GCSP_ECOUT6.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOSM6.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOSE6.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOLU6.798e-3665.69Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC01020A02SK Veg1 Citrus clementina cDNA clone C01020A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288393 ID=CX288393; Name=CX288393; organism=Citrus clementina; type=EST; length=328bp
CGAGGGGCAAGAGGAGACATCACCGCAATGTGTGCATTATACCCGTGTCA
GCCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGT
TTCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGA
AGGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTAC
CCTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGAT
AATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATG
CTCAGGTCGGTCTGACAAGCCCTGGTTA
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