CX288393

Overview
NameCX288393
Unique NameCX288393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_BURTA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gcvP PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.878e-36
Identity = 64/102 (62.75%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRNVC+IP SAHGTNPA+A M GMK+V V  DA+GN++I++L+  AE + ++L+ +M+TYPSTHGV+E+ + EIC+I+H +GGQVY+DGANMNA VGLT+PG
Sbjct:  609 HRNVCLIPASAHGTNPASAHMAGMKVVVVACDAQGNVDIDDLKAKAEQHANDLAAIMITYPSTHGVFEQNVREICEIVHAHGGQVYVDGANMNAMVGLTAPG 710
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHESR (Glycine dehydrogenase [decarboxylating] OS=Shewanella sp. (strain MR-7) GN=gcvP PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.160e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GM++V    D +GN+++E+L+  A    +NLS +M+TYPSTHGVYEE I EIC I+H +GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLEDLKAKAAEVAENLSCIMITYPSTHGVYEESIREICNIVHQHGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHESM (Glycine dehydrogenase [decarboxylating] OS=Shewanella sp. (strain MR-4) GN=gcvP PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.160e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GM++V    D +GN+++E+L+  A    +NLS +M+TYPSTHGVYEE I EIC I+H +GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLEDLKAKAAEVAENLSCIMITYPSTHGVYEESIREICNIVHQHGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHESA (Glycine dehydrogenase [decarboxylating] OS=Shewanella sp. (strain ANA-3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.160e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GM++V    D +GN+++E+L+  A    +NLS +M+TYPSTHGVYEE I EIC I+H +GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLEDLKAKAAEVAENLSCIMITYPSTHGVYEESIREICNIVHQHGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_VIBHB (Glycine dehydrogenase [decarboxylating] OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.514e-35
Identity = 65/102 (63.73%), Postives = 85/102 (83.33%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRNVC+IP SAHGTNPATA+M  MK+V V  D +GNI++ +L    + ++DNLS++M+TYPSTHGVYEE + E+C+++H  GGQVY+DGANMNAQVGLT+PG
Sbjct:  590 HRNVCLIPSSAHGTNPATASMVSMKVVVVKCDEEGNIDVTDLAAKIKKHKDNLSSIMITYPSTHGVYEEQVKEVCEMVHAAGGQVYLDGANMNAQVGLTTPG 691
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHESW (Glycine dehydrogenase [decarboxylating] OS=Shewanella sp. (strain W3-18-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.514e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GM++V    D +GN+++E+L+  A    +NLS +M+TYPSTHGVYEE I EIC I+H +GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLEDLKTKAAEVAENLSCIMITYPSTHGVYEESIREICDIVHQHGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHEPC (Glycine dehydrogenase [decarboxylating] OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gcvP PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.514e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GM++V    D +GN+++E+L+  A    +NLS +M+TYPSTHGVYEE I EIC I+H +GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLEDLKTKAAEVAENLSCIMITYPSTHGVYEESIREICDIVHQHGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHEB9 (Glycine dehydrogenase [decarboxylating] OS=Shewanella baltica (strain OS195) GN=gcvP PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.514e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GM++V    D +GN+++E+L+  A    +NLS +M+TYPSTHGVYEE I EIC I+H +GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLEDLKTKAAEVAENLSCIMITYPSTHGVYEESIREICDIVHQHGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SHEON (Glycine dehydrogenase [decarboxylating] OS=Shewanella oneidensis GN=gcvP PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.583e-35
Identity = 64/102 (62.75%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRN+C+IP SAHGTNPA+A + GM++V    D +GN+++E+L+  A    +NLS +M+TYPSTHGVYEE + EIC I+H +GGQVY+DGANMNAQVGLTSPG
Sbjct:  595 HRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLEDLKAKAAEVAENLSCIMITYPSTHGVYEETVREICNIVHQHGGQVYLDGANMNAQVGLTSPG 696
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SALAR (Glycine dehydrogenase [decarboxylating] OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvP PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.583e-35
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HR++C+IP SAHGTNPA+A M GM++V V  D  GNI++ +LR  AE + +NLS +MVTYPSTHGVYEE I ++C I+H  GGQVY+DGANMNAQVG+TSPG
Sbjct:  594 HRDICLIPASAHGTNPASAHMAGMQVVVVACDKNGNIDLADLRAKAELHANNLSCIMVTYPSTHGVYEETIRDVCDIVHQFGGQVYLDGANMNAQVGITSPG 695
The following BLAST results are available for this feature:
BLAST of CX288393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_BURTA8.878e-3662.75Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_SHESR1.160e-3563.73Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHESM1.160e-3563.73Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHESA1.160e-3563.73Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_VIBHB1.514e-3563.73Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_SHESW1.514e-3563.73Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHEPC1.514e-3563.73Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHEB91.514e-3563.73Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHEON2.583e-3562.75Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SALAR2.583e-3564.71Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]

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Properties
Property NameValue
Genbank descriptionC01020A02SK Veg1 Citrus clementina cDNA clone C01020A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288393 ID=CX288393; Name=CX288393; organism=Citrus clementina; type=EST; length=328bp
CGAGGGGCAAGAGGAGACATCACCGCAATGTGTGCATTATACCCGTGTCA
GCCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGT
TTCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGA
AGGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTAC
CCTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGAT
AATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATG
CTCAGGTCGGTCTGACAAGCCCTGGTTA
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