CX288415

Overview
NameCX288415
Unique NameCX288415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURP1_ORYSJ (BURP domain-containing protein 1 OS=Oryza sativa subsp. japonica GN=BURP1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 62/157 (39.49%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKT----CATSLESMLDFAGSIFGSETGFKT---VTTKSTSNTFQNYTILEVQ--EIPASKMVACHYMSYPYAIYGCH 594
            +FF  +DL  G+KM L+      +  A  LPR  A+S PF+ ++LP IL   SIP VSP A AM  TL  CE   +  E       CATSLESM++F  S  G+         V +  T    Q Y +  V+   +P   MVACH M Y YA++G H
Sbjct:   64 VFFLEKDLFPGSKMTLHFTRA--TAGAALLPRGRAESVPFASERLPEILSQLSIPAVSPTADAMWSTLAECEAARLAGETTKHKHYCATSLESMVEFVASSLGTRDVHAVSTEVISTLTPTPRQAYRVEAVRPVAVPGGDMVACHGMPYAYAVFGLH 218          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 61/188 (32.45%), Postives = 86/188 (45.74%), Query Frame = 1
Query:  154 FFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILEVQEI---PASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNG--DIADAISACHLDTSQW 702
            FF  + LK G  M +   I+D      FLPR  A   PFS  ++  + ++      S   K + D L  CE  P   E K C  S E M+DFA S+ G     +  TT+ T  +  N  I  V+ I     +K V+CH   YPY +Y CHS       +V+   ++  N    I   ++ CH+DTS W
Sbjct:  415 FFREKMLKSGTIMPMP-DIKDKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVR--TTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKV---RVYEADILDPNSKVKINHGVAICHVDTSSW 596          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 58/192 (30.21%), Postives = 91/192 (47.40%), Query Frame = 1
Query:  136 SSEVKIFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFK-TVTTKSTSNTFQNYTILEVQEIPASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGD--IADAISACHLDTSQW 702
            S E   FF   +L  GN M +   I+D      FLPR+ A   PF       + E+  +P  +   KA+  T+  CE  P + E K CATS E ++DFA  + G++   + T +T  +    +   +  V     ++ V+CH   +PY +Y CHS       +V+   ++  + D  I   ++ CHLDTS W
Sbjct:  409 SPEPGKFFRETELVSGNTMPMP-DIKDKMPPRAFLPRDIAKKIPFKPNA---VSEVFGVPLDTAMGKAVTSTVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKV---RVYEADIMAADSDQKINHGVAICHLDTSDW 593          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 60/188 (31.91%), Postives = 88/188 (46.81%), Query Frame = 1
Query:  154 FFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILEVQEI---PASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDN--GDIADAISACHLDTSQW 702
            FF  + LK G  M +   I+D      FLPR  A   PFS  ++  + ++      S  AK + D L  CE  P   E K C  S E M+DFA S+ G     +  TT++T+ +  N  I  ++ I     +K V+CH   YP  +Y CHS       +V+   ++  N    I   ++ CH+DTS W
Sbjct:  417 FFREKMLKSGTIMPMP-DIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVR--TTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKV---RVYEADILDPNSKAKINHGVAICHVDTSSW 598          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 60/188 (31.91%), Postives = 88/188 (46.81%), Query Frame = 1
Query:  154 FFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILEVQEI---PASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDN--GDIADAISACHLDTSQW 702
            FF  + LK G  M +   I+D      FLPR  A   PFS  ++  + ++      S  AK + D L  CE  P   E K C  S E M+DFA S+ G     +  TT++T+ +  N  I  ++ I     +K V+CH   YP  +Y CHS       +V+   ++  N    I   ++ CH+DTS W
Sbjct:  414 FFREKMLKSGTIMPMP-DIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVR--TTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKV---RVYEADILDPNSKAKINHGVAICHVDTSSW 595          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 60/193 (31.09%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  136 SSEVKIFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILEVQEIPA----SKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLDTSQW 702
            S E   FF  RDL  GN+M +   I D +    FLPR+ A   PF       +  L      +   + +  T+  C   P + E K CATS E ++DFA  + G     +   T+ST+    +  +  V  +PA    ++ V+CH   +PY +Y CHS  T  + +   +  V  N  I   ++ CHLDTS W
Sbjct:  471 SPEPGKFFRERDLVAGNRMPMP-DIADRTPPRAFLPRDIAAKIPFDAAA---VSALFGAAPGTAMRQVVSSTVAECARPPSRGETKRCATSAEDVVDFAVEMLGDNVVAR--ATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVYEA-DILAVDSNQKINHGVAICHLDTSDW 656          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 57/188 (30.32%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALY-LPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILEVQEIPASKM---VACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLDTSQW 702
            IFF  ++LK GN + +  +  E  +  + FLPR  AD  PF  +    +  L  +   +  AKA+++T+  C++ P K E K C TS E M+DFA ++ G +   +  +T   +   ++  I +V+ I   K+   V+CH   +PY +Y CHS     + +   +  V     I   ++ CH+DTS W
Sbjct:  127 IFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEA---VKSLFGLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVR--STVLPNGPGESIMIGKVKGINGGKITSSVSCHEYLFPYMVYYCHSVPKIRVYEA-EILSVQTKEKINSGVAICHIDTSAW 308          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 57/186 (30.65%), Postives = 81/186 (43.55%), Query Frame = 1
Query:  154 FFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILEVQEIPASKM---VACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLDTSQW 702
            FF    LK G  + +   I+D      FLPR      PFS  +L  I  +      S     + D +  CE  P   E K C  S E M+DFA S+ G     +  TT++ + + +   I +V  I   K+   V+CH   YPY +Y CHS     + +   + L      I   I+ CH+DTS W
Sbjct:  411 FFRESSLKEGTVIPMP-DIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGGIITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLR--TTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLEL-NSKKKINHGIAICHMDTSSW 592          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 60/189 (31.75%), Postives = 85/189 (44.97%), Query Frame = 1
Query:  154 FFTLRDLKVGNKMALYLP-IEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILEVQEI---PASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVG--DNGDIADAISACHLDTSQW 702
            FF    LK G    +++P I+D      FLPR      PFS  ++  I  +      S     + D +R CE  P   E K C  S E M+DFA S+ G     +  TT+S + + +   I +V  I     +K V+CH   YPY +Y CHS       +V+   L+       I   I+ CH+DTS W
Sbjct:  407 FFRESMLKEGT--LIWMPDIKDKMPKRSFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEGIITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLR--TTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKV---RVYESDLLDPKSKAKINHGIAICHMDTSAW 588          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURP4_ORYSJ (BURP domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=BURP4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 61/192 (31.77%), Postives = 92/192 (47.92%), Query Frame = 1
Query:  172 LKVGNKMALYLPIEDHSNSA---HFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPI-----KDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILE--VQEIPASKMVACHYMSYPYAIYGCHS-----HMTENINKVFRVSLVGDNGDIADAISACHLDTSQW 702
            L  G K+AL  P  DH  +A    F+ +++ D+ PF L+ +  IL +  I   S +A  + DTLR C          ++    CATS E++LDFA S  G+    + VTT       + Y +    V  I    +VACH M Y Y +Y CH       +  +++ V  V L G     A A++ CH++T+ W
Sbjct:  266 LPEGTKLAL--PHGDHGVAAAAPRFIYKDKGDAVPFDLRAMDAILAMFGILPGSDKAAQVADTLRACSELTAAGGGGEEPRACCATSREAVLDFAASALGTSAP-RAVTTLVHGREPRRYVVAADGVARIGGDAVVACHPMPYLYEVYYCHRPADAVALRVDLHAVADVGLGG-----ATAVAVCHVNTTTW 449          
The following BLAST results are available for this feature:
BLAST of CX288415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
BURP1_ORYSJ1.893e-1839.49BURP domain-containing protein 1 OS=Oryza sativa s... [more]
GP1_SOLLC7.953e-1732.45Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
BURPC_ORYSJ7.953e-1730.21BURP domain-containing protein 12 OS=Oryza sativa ... [more]
GP3_SOLLC1.357e-1631.91Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC1.357e-1631.91Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
BURPE_ORYSJ1.357e-1631.09BURP domain-containing protein 14 OS=Oryza sativa ... [more]
BURPG_ORYSJ3.022e-1630.32BURP domain-containing protein 16 OS=Oryza sativa ... [more]
JP650_ARATH2.558e-1530.65Probable polygalacturonase non-catalytic subunit J... [more]
JP630_ARATH2.558e-1531.75Probable polygalacturonase non-catalytic subunit J... [more]
BURP4_ORYSJ6.302e-1431.77BURP domain-containing protein 4 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01020B12SK Veg1 Citrus clementina cDNA clone C01020B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288415 ID=CX288415; Name=CX288415; organism=Citrus clementina; type=EST; length=703bp
ATCCTTCTACAGCTCCTCCTCCTGTGCGCATACAGAAGCGGTGCCAGGGA
ATTGAGAGAGGAGTCTCTGCCTCAAATGGATGTTCAACTTCATCATATGC
ATATAGCTCATCATTCATCCCATGTGGACGTAAACTCAAGCGAGGTCAAG
ATATTCTTCACCTTGAGGGATCTAAAGGTAGGTAATAAAATGGCCCTCTA
TCTTCCAATTGAAGATCATTCAAATTCTGCTCACTTTTTGCCTAGAGAAG
AAGCTGATTCCTTTCCATTTTCATTGAAACAACTTCCTTATATTCTTGAA
TTAACCTCCATCCCACGCGTCTCACCGCAAGCCAAAGCCATGGAAGACAC
TCTCAGGATGTGTGAAACCGATCCCATCAAAGATGAAATCAAAACTTGTG
CTACCTCTTTAGAATCCATGCTTGATTTTGCTGGCAGCATCTTTGGCTCG
GAGACAGGTTTTAAAACTGTGACCACAAAGTCTACCAGTAATACTTTCCA
AAATTATACAATCCTAGAGGTGCAAGAGATCCCTGCTTCCAAGATGGTAG
CTTGTCATTACATGTCCTATCCTTATGCAATTTACGGCTGCCATAGCCAT
ATGACAGAGAACATCAACAAAGTATTCAGGGTTTCTCTGGTCGGTGACAA
TGGAGATATAGCTGACGCTATTTCAGCTTGTCATCTGGATACCTCTCAGT
GGA
back to top