CX288415

Overview
NameCX288415
Unique NameCX288415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURP9_ORYSJ (BURP domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=BURP9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  226 SAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCE-TDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQN--YTILEVQEIPASK-MVACHYMSYPYAIYGCHSHMTENINKVFRVSLV-GDNGD--IADAISACHLDTSQW 702
            S+ FL R  +   PFS+K +  IL + S P  +  A  +  TL+ CE T  +  E   CATS+ES+LD   S  G++   + +T  +      +  Y +     +P S+ M+ACH M YPY ++ CH   T    ++++VSLV G++G   I   ++ CH +TS W
Sbjct:  314 SSIFLHRNNSKHIPFSMKNITDILTMFS-PVSATMADGIAATLQACEHTGMVHGEKAKCATSIESLLDVVVSSLGTKL-VRALTPGAPMEGVPSLRYIVASATPVPNSQSMLACHDMLYPYKVFFCH---TPKQTRLYQVSLVSGESGRPLIDGLLAVCHQNTSDW 474          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 59/191 (30.89%), Postives = 92/191 (48.17%), Query Frame = 1
Query:  172 LKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETD-PIKDEIKTCATSLESMLDFAGSIFGSE--TGFKTVTTKSTSNTFQNYTILEVQEIPASK--MVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNG---------DIADAISACHLDTSQW 702
            LK G+ +  Y  I   +  A FL R+ ADS P S K    IL + S P     A  ++  L  CE   PIK E + CATS+ES+++FA S+ G+     F              Y ++ V+ +   +   V CH M +P+A++ CH+    N  +V+ V L  +           +  +A++ CHLDTS++
Sbjct:  118 LKPGSIITPY--ITGIATRAPFLRRDIADSIPVSTKNFADILAMFS-PISLVMADGIQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMYKVVAVRTVAGLRGDTVTCHTMRFPFAVFYCHA---INPTRVYAVVLESEEDGSGSGSGTPEKMEALAVCHLDTSRF 302          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 56/188 (29.79%), Postives = 80/188 (42.55%), Query Frame = 1
Query:  154 FFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNTFQNYTILEVQEI---PASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNG--DIADAISACHLDTSQW 702
            FF    LK G  M +   I+D      FLPR    + PFS   +  I  +      S  A  +   +  CE      E K C  S E M+DFA S+ G   G    TT++   + +   I +V  I     ++ V+CH   YPY +Y CHS       +V+   L+       I   ++ CH+DTS W
Sbjct:  409 FFREAMLKEGTLMQMP-DIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLG--RGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRV---RVYETDLLDPKSLEKINHGVAICHIDTSAW 590          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURPB_ORYSJ (BURP domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=BURP11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 60/216 (27.78%), Postives = 95/216 (43.98%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDP---IKDEIKTCATSLESMLDFAGSIFGSET--GFKTVTTKSTSNTFQ----NYTILEVQEIPA--------------SKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGD---------IADAISACHLDTSQW 702
            +FF    L+ G+ +   +P    ++   FLPR  AD+ PFS  +   +L + + P     A+ +   L  C       +  E   CATSLES+ D A S+ G+     F      + + T       Y +  V+E+ A              + +VACH ++YPYA++ CHS        V  V+    +GD           +A++ CHLDTS+W
Sbjct:   73 VFFFRDALRPGSVITPTIP--PTTSLPAFLPRHVADAIPFSADRFADVLAMFA-PASLAMAREIRWALDTCGQRAAALLPGEKAGCATSLESLADLAASLLGTRDVRAFSAADLPTDAATTPARRGRYNVTSVRELSAMAGSGSSSSSEPAPAAVVACHDLTYPYAVFYCHSTKPTAAYAVTLVAATTGDGDGEGEAASPAKMEALAVCHLDTSRW 285          
The following BLAST results are available for this feature:
BLAST of CX288415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
BURP9_ORYSJ1.075e-1333.73BURP domain-containing protein 9 OS=Oryza sativa s... [more]
BURPA_ORYSJ9.099e-1330.89BURP domain-containing protein 10 OS=Oryza sativa ... [more]
Y639_ARATH1.188e-1229.79Probable polygalacturonase non-catalytic subunit A... [more]
BURPB_ORYSJ2.648e-1227.78BURP domain-containing protein 11 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC01020B12SK Veg1 Citrus clementina cDNA clone C01020B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288415 ID=CX288415; Name=CX288415; organism=Citrus clementina; type=EST; length=703bp
ATCCTTCTACAGCTCCTCCTCCTGTGCGCATACAGAAGCGGTGCCAGGGA
ATTGAGAGAGGAGTCTCTGCCTCAAATGGATGTTCAACTTCATCATATGC
ATATAGCTCATCATTCATCCCATGTGGACGTAAACTCAAGCGAGGTCAAG
ATATTCTTCACCTTGAGGGATCTAAAGGTAGGTAATAAAATGGCCCTCTA
TCTTCCAATTGAAGATCATTCAAATTCTGCTCACTTTTTGCCTAGAGAAG
AAGCTGATTCCTTTCCATTTTCATTGAAACAACTTCCTTATATTCTTGAA
TTAACCTCCATCCCACGCGTCTCACCGCAAGCCAAAGCCATGGAAGACAC
TCTCAGGATGTGTGAAACCGATCCCATCAAAGATGAAATCAAAACTTGTG
CTACCTCTTTAGAATCCATGCTTGATTTTGCTGGCAGCATCTTTGGCTCG
GAGACAGGTTTTAAAACTGTGACCACAAAGTCTACCAGTAATACTTTCCA
AAATTATACAATCCTAGAGGTGCAAGAGATCCCTGCTTCCAAGATGGTAG
CTTGTCATTACATGTCCTATCCTTATGCAATTTACGGCTGCCATAGCCAT
ATGACAGAGAACATCAACAAAGTATTCAGGGTTTCTCTGGTCGGTGACAA
TGGAGATATAGCTGACGCTATTTCAGCTTGTCATCTGGATACCTCTCAGT
GGA
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