CX288461

Overview
NameCX288461
Unique NameCX288461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288461 vs. ExPASy Swiss-Prot
Match: NACB_DEBHA (Nascent polypeptide-associated complex subunit beta OS=Debaryomyces hansenii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 1
Query:    1 PSSKMNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 447
            P     + KL K + A + GG     R K   +  T  DD +L   L ++    I  IEE N FK+D  V+ F    VQ +   NT+ ++G PQ K +  ++P I+ QLG +NL+ LRKLAEQ Q  + P    G     E+D   +P+L+
Sbjct:    2 PVDPEKLAKLQKASVAKKVGGS----RVKAKKNVKTEQDDTKLIEALGKLKAQKIEGIEEANFFKEDGKVLHFNRVGVQGAAQHNTFALTGYPQEKDVTQLIPQILPQLGAENLEILRKLAEQIQAGKNPELNAGGAEGAEED---IPDLI 145          
BLAST of CX288461 vs. ExPASy Swiss-Prot
Match: NACB_CANAL (Nascent polypeptide-associated complex subunit beta OS=Candida albicans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.159e-13
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   22 EKLMKM--AGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAGTGAPTTQED-DDDEVPELV 447
            EKL K+  + A + GG     R K   +  T  DD +L   L ++    I  +EE N F++D  V+ F    VQ + A+NT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K   +  TG+     D   +++P+LV
Sbjct:    6 EKLAKLQKSSAKKVGGS----RVKAKKNIKTEQDDTKLIEALGKLKATKIEGVEEANFFREDGKVLHFNRVGVQGAPASNTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKTPKDFNTGSANAAADAGGEDIPDLV 149          
BLAST of CX288461 vs. ExPASy Swiss-Prot
Match: NACB_PICGU (Nascent polypeptide-associated complex subunit beta OS=Pichia guilliermondii GN=EGD1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 49/145 (33.79%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   22 EKLMKMA-GAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 447
            EKL K+  GA +  G   V+ KK    +    DD +L   L ++    + A+EE N FK+D  V+ F    VQ++   N    +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  + P+ G          D+++P+L+
Sbjct:    6 EKLAKLQQGAAKKVGGQRVKAKKVKSEQ----DDTKLMEALGKLKATKVNAVEEANFFKEDGKVLHFKRVGVQSAAQHNVCAFTGYPQEKDVTQLIPQILPQLGAENLEILRQLAEQIQAGKTPSMG----GENAGADEDIPDLI 142          
The following BLAST results are available for this feature:
BLAST of CX288461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_DEBHA2.335e-1435.10Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANAL1.159e-1335.14Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICGU2.854e-1233.79Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionC01020F10SK Veg1 Citrus clementina cDNA clone C01020F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288461 ID=CX288461; Name=CX288461; organism=Citrus clementina; type=EST; length=736bp
CCTAGCTCCAAGATGAATGTGGAGAAGCTAATGAAGATGGCCGGTGCAGT
TCGCACTGGTGGTAAGGGTAGTGTGAGAAGAAAGAAGAAGGCTGTTCATA
AGACAACAACCACCGATGACAAGAGGCTTCAGAGCACCTTGAAGAGAATA
GGAGTGAATGCTATTCCTGCAATTGAGGAAGTTAACATTTTCAAGGATGA
CGTCGTTATTCAGTTCTTAAATCCCAAAGTACAAGCTTCAATTGCTGCCA
ACACATGGGTAGTTAGTGGTGCCCCACAAACCAAGAAGTTGCAGGATATT
CTCCCTGGAATTATCAATCAATTGGGGCCAGATAATTTGGACAATCTGAG
GAAGTTGGCGGAGCAGTTTCAGAAGCAAGCACCTAATGCAGGAACTGGTG
CACCCACGACTCAAGAGGACGACGACGATGAGGTCCCAGAGCTTGTGGCA
GGCGAGACGTTTGAAGCTGCCGCAGAGGAGAAAACAGAGAAACCTGACGC
TGCTTCTTAGAGAGTTTTATCTAGAGGGACTTTGTGTTATTCTATATATT
TTCTATGTTTTTTGAGTTTTTATTTTACTTTTCCGAGTCAACTTTCTCTT
GTTTTATCTGATTCTCCCTGTGACACTAGATATTGTTACTTTTTAATTCA
ATGTTTTGCTCCAGTGAAACCAGTGAAAACCCTTTTACTCTTTCAGAATC
CGGAGGCACTGTTGCAATGGCTTTCTATTGTGCATT
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