CX288473

Overview
NameCX288473
Unique NameCX288473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: PHT47_ORYSJ (Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = -1 
Query:  297 AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 533
            A  ++G   NH D+AP+++G+++G+SNTAG LAG+ G   TG IL+             +W  VF V   L +  + ++ +FSTGEK+ +
Sbjct:  350 ALGRAGFAVNHMDVAPKFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSSIIFLIFSTGEKIFE 439
The following BLAST results are available for this feature:
BLAST of CX288473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PHT47_ORYSJ8.832e-1136.67Probable anion transporter 7 OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionC01020G10SK Veg1 Citrus clementina cDNA clone C01020G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288473 ID=CX288473; Name=CX288473; organism=Citrus clementina; type=EST; length=722bp
GAGGCTTTTGTGTCATTACAATTTTTCTTACAAATATATTCTTCTTTATT
GAGAATTTGAGATGGATTCATTGATGCAACTTTTCTGAGAATTGAACTGG
ATTCTTCCACAAATTTCAATATGCCGGCAGTTTCCTGGGCCTTTGGAAAA
TTCGGTCGATCTTCAAGATCAAGAATCCAAAATGAAATCTCTTGCAATTT
CAATGTTTTGATCTTCTGTCAAATCAATCAGTTGAAGTCTCTTCTATTCT
AGCTCAGGCTTGAGCCGATGCTTGTTATTGGGTCCCCTAGGAGTTAATCC
ACAACTTTCTCACCAGTTGAAAAGAGATTCCACACCGCAGTTCCAACCAG
ATAGAGCCCAACAGAAACCTTGAAAACATCGTCCCAAGAACCATGTTGCA
AGATATAGCCAGTAGCTGCAGTTCCAAACACTCCTGCCAGAACTCCTGCA
GTATTGGACAGACCAAGCAATACTCCAGAATAACGGGGGGCAATATCCTG
ATGGTTTGAATATAGACCAGACTGTGAGAATGCACCTCGTGCCGAATTCG
GCACGAGGCCTCGTGCCGAATTCGGCACGAGGAATAAGATCAAAATCGTT
GAAGCTGGAGCCTTGGAACCAATCATTAGCTTCCTGCAGTCACCAGATTT
GAATCTACAGGAGTATGCCGCTGCAGCTTTGCTCACACTATCTGCTTCTT
CTGTCAACAGCCTTTTATAGTG
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