CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNPW (Octanoyltransferase OS=Synechococcus sp. (strain WH7803) GN=lipB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEK--KALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            LVP+ +AW+WQ+ + +E+  K      +  P+ + +LQH P YT+G G SE++L FD + PP  ++R +RGGEVT+H PGQLV+YP+++L  H+ DLHW
Sbjct:   28 LVPFVQAWTWQR-LWQERLLKGADSGGDPPPEAVWLLQHPPCYTLGRGASEDHLLFDPEHPPAPLHRIDRGGEVTHHAPGQLVIYPVLDLHRHRTDLHW 125          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_TRIEI (Octanoyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=lipB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.814e-21
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCP---DTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            L  Y+ AW WQ+++V+++        +CP   D LI+L+H  VYT+G G   ++L FD     ++++R ERGGEVTYH PGQLV YPI+NL++++ DLHW
Sbjct:   13 LTKYSVAWEWQRSLVQQR-------HNCPELADVLILLEHPQVYTLGQGAKLDFLKFDPTQNKYELHRVERGGEVTYHCPGQLVGYPILNLKHYQQDLHW 105          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROMM (Octanoyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=lipB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 3
Query:  363 QLNYWFRCECFDLYKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            Q  + F C       E VP+  AW WQ+   ++  A    N   P  + +LQH   YT+G G SE  L FD+ +PP  ++R +RGGEVT+H PGQLV+YP+++LR ++ DLHW
Sbjct:   18 QSTFLFECS------EPVPFEMAWLWQQQWQQQLFA----NPLAPQAVWLLQHQACYTLGRGASEANLLFDVNNPPAALHRIDRGGEVTHHLPGQLVVYPVLDLRRYQTDLHW 120          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROM4 (Octanoyltransferase OS=Prochlorococcus marinus (strain MIT 9211) GN=lipB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 42/98 (42.86%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  408 ELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            EL+ +  AW WQK    +++ L+         + +L+HS  YT+G G +E+ L F+L + P+ VYR +RGGEVT+H PGQLV+Y +++LR +K DL+W
Sbjct:   37 ELIDFRVAWDWQK----QRQKLLFEKPGSSQAVWLLEHSECYTLGRGATEDNLLFNLSNSPWDVYRIDRGGEVTHHMPGQLVVYLVLDLRRYKTDLNW 130          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNPX (Octanoyltransferase OS=Synechococcus sp. (strain WH8102) GN=lipB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  408 ELVPYNEAWS----WQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            + VP+  +W+    WQ+ ++++           P+ + +LQH   YT+G G S E+L+F L  PP  V+R +RGGEVT+H PGQLV YP+++LR  + DLHW
Sbjct:   27 DAVPFERSWADQRHWQQRLLEQPHL--------PEAVWLLQHKACYTLGRGASSEHLHFPLDQPPAPVHRIDRGGEVTHHLPGQLVAYPVLDLRRRQPDLHW 120          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNSC (Octanoyltransferase OS=Synechococcus sp. (strain CC9605) GN=lipB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  414 VPYNEAWS----WQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            V ++ AWS    WQ  ++ +  A        P+ + +LQH   YT+G G SE++L+FD  +PP  +YR +RGGEVT+H PGQLV YP+++L+    DLHW
Sbjct:   29 VRFDAAWSAQQRWQTRLLADPSA--------PEAVWILQHQTCYTLGRGASEKHLHFDPAEPPAPLYRIDRGGEVTHHLPGQLVAYPVLDLQRRTPDLHW 120          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNS9 (Octanoyltransferase OS=Synechococcus sp. (strain CC9902) GN=lipB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  411 LVPYNEAWS----WQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            L+P+  AW     WQ+ + +E  +        P+ + +LQH   YT+G G S ++L+FD  +PP  ++R +RGGEVT+H PGQLV YP+++L+ H  DLH
Sbjct:   26 LIPFERAWRDQQLWQQRLFEEPSS--------PEAVWILQHPACYTLGRGASAQHLHFDPNEPPAPLHRIDRGGEVTHHLPGQLVAYPVLDLQRHTPDLH 117          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROMA (Octanoyltransferase OS=Prochlorococcus marinus GN=lipB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  408 ELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            EL+ +  AW WQ+    ++K L E +      + +L+H   YT+G G SE+ L FD++ PP   YR +RGG+VT+H PGQLV+Y +++LR +K DL W
Sbjct:   23 ELIDFKIAWDWQRKW--QEKLLAEPSNK--QAVWMLEHFDCYTLGRGASEDNLLFDVEKPPIDFYRIDRGGDVTHHLPGQLVVYLVLDLRRYKTDLDW 116          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROHO (Octanoyltransferase (Fragment) OS=Prochlorothrix hollandica GN=lipB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  477 ERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLK------------------DPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            +R+ D  DTL++L+H PVYT+G G S +++ F                      P  +++RTERGGEVTYH PGQLV YPI+NLR    DLHW
Sbjct:    5 QRDPDLADTLLLLEHPPVYTLGRGSSLDFIKFTPPASFTAGVTPSSRAEPTPPQPGPELHRTERGGEVTYHCPGQLVGYPILNLRRLSADLHW 97          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROMT (Octanoyltransferase OS=Prochlorococcus marinus (strain NATL2A) GN=lipB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  405 KELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            K +VP+  A  WQKN    +K LIE+    P  + +L+H   +TMG G  ++ L F+  + P  V+  ERGGEVT+H PGQ+V Y ++NL  HK DL W
Sbjct:   36 KNIVPFETALGWQKNF---QKNLIEQPFS-PQAVWLLEHFSCFTMGRGSDKKNLLFEENNSPLPVFSIERGGEVTHHMPGQIVGYLVLNLSLHKKDLSW 130          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIPB_SYNPW8.143e-2246.46Octanoyltransferase OS=Synechococcus sp. (strain W... [more]
LIPB_TRIEI1.814e-2146.00Octanoyltransferase OS=Trichodesmium erythraeum (s... [more]
LIPB_PROMM9.954e-2042.48Octanoyltransferase OS=Prochlorococcus marinus (st... [more]
LIPB_PROM41.101e-1842.86Octanoyltransferase OS=Prochlorococcus marinus (st... [more]
LIPB_SYNPX2.452e-1841.18Octanoyltransferase OS=Synechococcus sp. (strain W... [more]
LIPB_SYNSC3.202e-1843.00Octanoyltransferase OS=Synechococcus sp. (strain C... [more]
LIPB_SYNS99.317e-1841.00Octanoyltransferase OS=Synechococcus sp. (strain C... [more]
LIPB_PROMA4.624e-1742.86Octanoyltransferase OS=Prochlorococcus marinus GN=... [more]
LIPB_PROHO1.139e-1545.16Octanoyltransferase (Fragment) OS=Prochlorothrix h... [more]
LIPB_PROMT1.487e-1543.43Octanoyltransferase OS=Prochlorococcus marinus (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
back to top