CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROM1 (Octanoyltransferase OS=Prochlorococcus marinus (strain NATL1A) GN=lipB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  405 KELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            K +VP+  A  WQKN +K    LIE     P  + +L+H   +TMG G  ++ L F+  + P  V+  ERGGEVT+H PGQ+V Y ++NL  HK DL W
Sbjct:   36 KNIVPFETALGWQKNFLKN---LIEEPFS-PQAVWLLEHFSCFTMGRGSDKKNLLFEENNSPLPVFSIERGGEVTHHMPGQIVGYLVLNLSLHKKDLAW 130          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNJB (Octanoyltransferase OS=Synechococcus sp. GN=lipB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 3
Query:  414 VPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDP--------------PFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            VPY  AW+WQ+     + A + R+   PD L++L H  VYT+G G   ++L   L  P                ++ R ERGGEVTYHGPGQ V Y ++NL+ H+ DLH
Sbjct:   21 VPYRTAWAWQQ----ARLAHMIRDPQLPDGLLLLTHPAVYTLGAGADPKFLK-SLSQPIGSPAIHPESPSEQEPEILRVERGGEVTYHGPGQWVGYAMLNLKRHRPDLH 124          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_RUBXD (Octanoyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=lipB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGT--------GGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLR 677
            L PY EAW  Q+ +V+++     R+ + PDTL++L+H PVYT+G         G  EEYL    +    +V+ ++RGG+ T+HGPGQLV YPII L+
Sbjct:   18 LTPYAEAWELQRELVRKR-----RSGEIPDTLLLLEHPPVYTVGRAARDASNLGAGEEYL----RSLGAEVFWSDRGGDATFHGPGQLVGYPIIRLK 105          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNJA (Octanoyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=lipB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  414 VPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNF---DLKDPPFQ----------VYRTERGGEVTYHGPGQLVMYPIINLRNHK 686
            VPY  AW+WQ+     + A + R+   PD L++L H PVYT+G G   ++L      +  P  Q          + R ERGGEVTYHGPGQ V Y ++NL+ H+
Sbjct:   22 VPYRRAWAWQQ----VRLAQMIRDPQVPDGLLLLTHPPVYTLGAGADPKFLKSLAGQIGSPDTQPESPVTEGPEILRVERGGEVTYHGPGQWVGYALLNLKRHR 121          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_GEOUR (Octanoyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=lipB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            L+ ++EA+S Q+ +  E  A         +TL++L+H PVYT+G+GG E     ++ D   +V R  RGG+VTYHGPGQLV YP+I+L     DLH
Sbjct:    8 LIDFDEAYSIQERLAAEVFA-----GSGAETLLLLEHPPVYTIGSGGDEG----NILDTAIEVRRINRGGDVTYHGPGQLVGYPVIDLARRGCDLH 94          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PELPD (Octanoyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=lipB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            +V Y  A+S Q+ I       + RN   P+TL++L+H PVYT+G  G EE    ++ D   Q  R  RGG+VT+HGPGQLV YP+INLR    DL
Sbjct:    8 VVDYAAAFSLQERIADG----VYRNAT-PETLLLLEHHPVYTIGRAGCEE----NILDHSIQAIRISRGGDVTFHGPGQLVGYPLINLRPRGCDL 93          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_CELJU (Octanoyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=lipB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  417 PYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            PY ++W        +      R  D PD L +++H PV+T G  G  E+L F    P   V +T+RGG+VTYHGPGQLV YP+++LR  KM
Sbjct:   16 PYEQSWQAMTAFTNQ------RTPDTPDQLWLVEHPPVFTQGQAGKAEHLLFPGDIP---VVQTDRGGQVTYHGPGQLVAYPLLDLRRLKM 97          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_ALHEH (Octanoyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=lipB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLR 677
            Y E WS  +    E      R  D PD L V+ H PVYT+G  G  E++   L      V  T+RGG+VTYHGPGQ+V+YP+++LR
Sbjct:   19 YRETWSAMRRYTDE------RGPDTPDQLWVVSHPPVYTLGQAGRREHI---LDPGEIPVVETDRGGQVTYHGPGQIVLYPLLDLR 95          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_GEOMG (Octanoyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=lipB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  495 PDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            P+TL++L+H PVYT+G GG  E    ++ DP  +V    RGG+VT+HGPGQLV YP+I+L     DLH
Sbjct:   31 PETLLLLEHPPVYTIGRGGCRE----NVLDPGIRVVEANRGGDVTFHGPGQLVGYPVIDLGRRGRDLH 94          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_THET8 (Octanoyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=lipB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFD---LKDPPFQVYRTERGGEVTYHGPGQLVMYPI 665
            LVPY EAW++QK + +E  A      + P TL++L+H  V T+G   + E L F     ++  F++Y  ERGG+VTYHGPGQLV YPI
Sbjct:   10 LVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPI 92          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIPB_PROM11.487e-1543.43Octanoyltransferase OS=Prochlorococcus marinus (st... [more]
LIPB_SYNJB4.328e-1540.37Octanoyltransferase OS=Synechococcus sp. GN=lipB P... [more]
LIPB_RUBXD9.642e-1543.30Octanoyltransferase OS=Rubrobacter xylanophilus (s... [more]
LIPB_SYNJA1.645e-1440.38Octanoyltransferase OS=Synechococcus sp. (strain J... [more]
LIPB_GEOUR2.148e-1443.75Octanoyltransferase OS=Geobacter uraniireducens (s... [more]
LIPB_PELPD1.066e-1346.32Octanoyltransferase OS=Pelobacter propionicus (str... [more]
LIPB_CELJU1.392e-1342.86Octanoyltransferase OS=Cellvibrio japonicus (strai... [more]
LIPB_ALHEH1.392e-1344.19Octanoyltransferase OS=Alkalilimnicola ehrlichei (... [more]
LIPB_GEOMG1.818e-1351.47Octanoyltransferase OS=Geobacter metallireducens (... [more]
LIPB_THET82.375e-1346.59Octanoyltransferase OS=Thermus thermophilus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
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